Array 1 75850-77585 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJWZ01000004.1 Gardnerella vaginalis ATCC 14018 = JCM 11026 strain ATCC 14018 14018_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75850 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 75911 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 75972 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 76033 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 76094 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 76155 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 76216 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 76277 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 76338 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 76399 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 76460 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 76521 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 76582 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 76643 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 76704 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 76765 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 76826 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 76887 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 76948 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 77009 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 77070 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 77131 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 77192 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 77253 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 77314 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 77375 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 77436 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 77497 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 77558 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //