Array 1 305959-304404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBQ02000003.1 Klebsiella michiganensis strain FDAARGOS_66 scf7180000000010_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 305958 29 100.0 32 ............................. GAAGCGCTCAAAGAGATACTTATCACCGGCAA 305897 29 100.0 32 ............................. CGAAGGCTTAACACAAGCGAGTTTTTCAGAGA 305836 29 100.0 32 ............................. ATATGCCGATCCCGGTTGATACTGGCATGGAA 305775 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 305714 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 305653 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 305591 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 305530 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 305469 29 96.6 32 ............................A ATTGTCTTGCCGTAAGCCCAGAGACTTCTCCC 305408 29 100.0 32 ............................. GTTTTTTTGCCATAATTAACTCCGAAAATAGT 305347 29 100.0 32 ............................. CGGGGATAGAGGATTTCCGTTTTCACGACCTC 305286 29 100.0 32 ............................. GGTTTCGACTACTCCATGAATACCGTCTCCTC 305225 29 100.0 32 ............................. TTGACGGGAGGGTATGGTCTGCGATTGTCATT 305164 29 100.0 32 ............................. GCACAACGGAATACTTGTCACTGACTATAGCT 305103 29 100.0 32 ............................. AAAATCCAGCAACACTTACATCAACCTGAGGC 305042 29 100.0 32 ............................. TGTTCGATAACTTCTGATTTACGCATGGTTCC 304981 29 100.0 32 ............................. AGCAGCGCGCTAACTGGTTCCAGATGGCACAG 304920 29 100.0 32 ............................. GGCCAGGCGGTCGTAGGGGCGAATCAGTGAAT 304859 29 100.0 32 ............................. AACGTAAACGGGCTGGGCTTTACTGAGCGGAT 304798 29 100.0 32 ............................. AGATTGATGCAGACATAGCGAAGGCGGAAGAA 304737 29 100.0 32 ............................. ATTACGCAGGTCTTCACGCAGCGGCGCGGCAC 304676 29 100.0 32 ............................. TCGCGACAGATTGGGGCGACCTGGTATTTTGC 304615 29 100.0 32 ............................. TCTTCAGAGCGCACCCTTGCTGTTCAGGCTGC 304554 29 96.6 32 ............T................ CAATGGTAACAAGTGATCCGAGCGCAATCATC 304493 29 96.6 32 .............T............... GACTCACGAAACGCTTGGTTGATGTCTGAATG 304432 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATCGCCTGATGGCTACGGGAAAGGCGCAGGGGCTCTATTTTGGTCTGCCGACGATGGCGACGGCGAATGCCATGTTCGATCGTATGTCGGAGAGCTGGCTGGCGTTGTATCAACCCGGTTCACGGCCAAGCCTGGTGCTGGCGCATAGCGCACGTGGATTAATGGATCGCTTCAATCAGTCTTTGTGGTCGGGAGATTTATCGGGTTCAGAAGAACCCGATGAGCTCCAGCCATCCAGCCAGGGATGCGCCGCCTGGTTTGCCGACAGTAATAAAAAAGCGCTGTTGGCCGAGGTGGGCGTTGGCACGCTCGATCAGGCGATGATGGCGGTGATGCCGTTTAAACACAATAACCTGCGGATGTTAGGGCTGAATAATAAAATCTTGCTGGCGGATGAGATTCACGCCTATGACGCCTATATGTCGCGGATTCTGGAAAGTCTGATTGAAAAACAGGCCAGCGATGGCAATACCACGATTTTACTTTCCGCCACGCTCT # Right flank : CCCGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCGCGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCAGCATTCTTTAGTGTGGCAAAGTCCGCTTCCAGGTAATACTTGCCAAATTTTGGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACCGATGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAACGCATCATGGCGACAGTCCTTGTTGCCTGATTTTATCGTTAGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATTACATCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAGCTGTACGTCATGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3569581-3569788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBQ02000003.1 Klebsiella michiganensis strain FDAARGOS_66 scf7180000000010_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3569581 28 100.0 32 ............................ GTAAAAAACTCCCTACTGTGCTTTACCGGCAG 3569641 28 100.0 32 ............................ AGGTGACCGAAAGGTACTTATCAGGTTCAAAC 3569701 28 96.4 32 ............G............... CTGGACAGCCAATGCGACAGGTTATGGCTTTA 3569761 28 82.1 0 C.......................TGGT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTTATCCATCAGGTGGTGGATAAATTTATCGTCGAGCTGCAGGTTCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTCAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCAATGGCGCGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGACAGGTGACCGTTGAACTGGATAAAGAGAAAAATGCGCTGACCTACGACTTCCAGAGTGCGCAGAAGCACAAACCGGAAGCGGCGCATTAAGTTTCGGTACTCAGTGACAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCTATGTCCTGGACCCTTTTTTATTCCACTTTTTAACTTGTTGATTTTAATAAAGAGAAAATATAGCGTAAAATTATGGTGGCAGAGAGGATGTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTTGTTCGTTCA # Right flank : TGGATTAAGCATATGGTTATAGAAAGATAATTCGAAGCTTGCTCTCACAGAGAGCTACGGTCATGAATAGCGTGAGTTTATAACTAAATAATGGTATCAGGCAGGAATATAAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGCTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //