Array 1 1383311-1383892 **** Predicted by CRISPRDetect 2.4 *** >NC_008212.1 Haloquadratum walsbyi DSM 16790, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================ ================== 1383311 30 100.0 36 .............................. AGTCCTGTGCGTCGGTTACGAAGACGATCTCGGAGC 1383377 30 100.0 34 .............................. GTTCGCGGGGATGCGCCAAGACGCCATCCCGCTG 1383441 30 96.7 192 ..................T........... GATAGTCATGGATAACATAAGGCAAGAGGGTATCATAGAACGGTTGGCATGGTTTTCTGATATCGGTCGAGAGGACTGCTATTGCTGCTTTTGAATAGCGGCAATATTTTTTATCTCTCAGATGCTGGCTTTCTGAAAGCTACTGAGATGTGTGAATCGTTCTATGACACCCTGTAAGGCAATGCAAATAGA 1383663 30 100.0 36 .............................. GCCGTCCCGGTGACTGTCACCGAGGGTCAAGAGATG 1383729 30 93.3 37 .........................CG... TCGCCGATAAGACGAGTGCTGCAAGTCGGAGTGACGG 1383796 30 93.3 36 ......C......................C GCTACTCGTGCAAGGGGTTATGTGATGAGATCGCTA 1383862 30 83.3 0 ........C.....T...T...A......C | C [1383866] ========== ====== ====== ====== ============================== ================================================================================================================================================================================================ ================== 7 30 95.2 62 GTTTCAGATGAACCCTTGATGGGTTGAAGT # Left flank : CATTTGATGGGTGAGAGCTCATATGTATTATTTATCCAGTGTCGTGTTGTCGGTGTTGATATTGCTGTTTCGGTGATATGTATTTACTCAATTATATTGAATCTGTGACGTGCCCGTGTATTATTTACTCCATATCGCTTACAGTGGATCTTGTTTATTCTGCGGGGTTTTTATTCACGATCCGCTTCGCAAGGCAGCCATCGATATATCCACCGGGGTGATGTGTCCCCCATGATCACCCTGAAGGGAGTGATGTCGTTCTGAATTATGCATGATTCCGGCTGCTCGATGTGCAATTTTGGAGATGAAATATTCTCTGTATGTAATCAGTTGGTCGATATGGAGACCACTGATACAGAAGATTACTCACTCATGATTCATCATCCCTCATCTTGTCTTTGTTTCCGTCGACCCGGGGGGAAAACACCCTATTGGGGGTCGACGGAAAATATTTATTCTAACTTGCCGTGGTTGTATTTGTGCCTTGTATATTGGGCATG # Right flank : CCAATCGTCCAATCAGTCCGGTGACCAGGTCACTCGTTCGATCAGGATATTGTTGGATTGTTCGTTGAACAGATCGGTCATAAACCATCTAGCCTTGATGACGGTGCAGGATTTGAGGGCGTTGATGCTAAAACCAAATTGGGGAACGCCTGTTAAACAAGCACTCACTCTCTGGATCTTATCCTCCCGATCCTGAGAGAAATCCGATCCAGTTGTATAATTGACTTCGGAAAGAGTCTTGAGCGTGTCTTCTCGAGTTGCATGAGAGTCGGGTCGCTTGTGCGCGCCAATTCCGTGTTTCTTCCCTCGATCTGTGATTAAGAGACACGTGGTTGGATGTGTCAACTGTTCAGAGAGGGTTAGGAGCCATGACACAAAGTCTAAACTTGAGTCGTAATATCATGTACCTATGCTTATTGGACTCAACGAGTCCACCAACCGAGATCGGCATTGTGACGGTCAATATACTCATCTGACACTACTGATAGTTTGCTTAGTTT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-2.87, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGAACCCTTGATGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //