Array 1 32336-31288 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONR01000087.1 Escherichia marmotae strain SC341 NODE_8_length_205976_cov_164.502_ID_377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32335 28 100.0 32 ............................ AATCAGGTCGTCAATTTTTCGCGGCTGTGTAA 32275 28 100.0 32 ............................ GCTGGCTTTAGCGCGTGAACAGTACTGTTAAC 32215 28 100.0 32 ............................ GATCAGCATCCCGACAGCTTCCCCCATGGTCA 32155 28 100.0 32 ............................ TCAATCCTCCCCGCCTGCGCCGCGTTGTAGTT 32095 28 100.0 32 ............................ ACTGATGATAAGGGCGTCTGGTCACAACTCGT 32035 28 100.0 32 ............................ GATAACGGCATCAGTGTTCGTGCCTGGATTAA 31975 28 100.0 32 ............................ CAGCTCAGAGAAAACCGCTTTCAGCCTTGATA 31915 28 100.0 32 ............................ AGTAGAAGACACGCAGATCGGCTGGAAAAATG 31855 28 100.0 32 ............................ GGATTACCCTGGACAGCCAGGGATGTTAACAA 31795 28 100.0 32 ............................ CAGCAGTACAGCCTCTTCCATGCCGTCAGCGC 31735 28 100.0 32 ............................ GGCAGTGTGGCCACTTTTACGTTACGCGTAAT 31675 28 100.0 32 ............................ TCGGAAAGCTTGTCAGCGTTGCTCACGTAACT 31615 28 100.0 32 ............................ AAACCCCTCTGTCGTTACTTTGCATTCAGCCG 31555 28 100.0 32 ............................ ACAGCAAACGGCGGGTGTATCGACTCGACGGG 31495 28 100.0 32 ............................ AACTGCGGCCTTTGAGTCGGTCCCCATCGCAT 31435 28 100.0 32 ............................ ACGATGCTGAATAAAATCACTGATATCATGAA 31375 28 100.0 32 ............................ GTAGTGATAAACTCCGGCGCACCAGACGACTG 31315 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGCCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47016-46627 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONR01000087.1 Escherichia marmotae strain SC341 NODE_8_length_205976_cov_164.502_ID_377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47015 28 100.0 32 ............................ TGTTGCTCACTCGTCATGCCGATGAGGGCGTC 46955 28 100.0 32 ............................ GGTGGGATGGCCAGCGCGAAACGCACGCAGAC 46895 28 100.0 32 ............................ TTTGATTTTTTCGAATAATTGAAGTATCCGTT 46835 28 100.0 32 ............................ GTCCGTGAGGTCGTCCGACGATAGTTTTTTCA 46775 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 46715 28 100.0 32 ............................ CACATCAGCGTTATTCGCTGGCAATCGGGGTT 46655 28 92.9 0 ....................T...C... | C [46632] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9624-9914 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONR01000010.1 Escherichia marmotae strain SC341 NODE_19_length_80757_cov_170.476_ID_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ================================================ ================== 9624 47 100.0 47 ............................................... CCGCATCCGGCAATATGCACTGATGCCGGATGCGCTTATGCTTATCC 9718 47 100.0 45 ............................................... NNNNNNNNNNNNTACAAATTTGTGCCTTAACCGTAGGCCGGATAA 9757 47 97.9 48 ...G........................................... GGATAAGGCGTTCACGCCGCATCCGGCAATTGTGCACCGATGCCGGAT 9868 47 95.7 0 .CG............................................ | ========== ====== ====== ====== =============================================== ================================================ ================== 4 47 98.4 47 GGCCTACAAATTTGTGCCTTAACCGTAGGCCGGATAAGGCGTTCACG # Left flank : GGAACCTGGTTTTTCACGGTAAATTTACGGAATCGTCGAAGCCAGCTTTTGACCACCCAGTATCAGATGCTCCGTAACGCCATTGTTAAAGTTAAGCGAGCCAGACCTTTTGAAATTAACGCCTGGGTAGTTTTGCCGGAGCATATGCACTGTATCTGGACATTACCCGAGAGCGATGATGATTTTTCTTCTCGCTGGCGGGAGATTAAAAAGCAATTCACCCATGCTTGTGGATTGCAAAATATCTGGCAACCGCGTTTTTGGGAGCACGCCATCCGCAATACCAAAGACTATCGCCATCATGTTGATTATATTTATATAAATCCAGTAAAACATGGCTGGGTAAAGCAAGTAAGTGATTGGCCATTCTCAACGTTTCATCGCGATGTCACGAAAGGGTTATATCCCATCGATTGGGCGGGAGACGTAATGGATTTGAGTGCCGGGGAGCGTATCATTTTGTAATTGTGCGCTGGTGCCGGATGCACTTACGCTTATCC # Right flank : GCCGCATCCGGCAATATGCACCGATGCCGGATTCTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCGTAGCGCGCCAGCAAAGGGCGTAACTGCGGCGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGTTCCTTCACCTGCGGCATCGTACTCTGGAACTGGTTGAGCATATTCGGGTCAACCGGCACGCTGTCGAGCATCACTTTGCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGTTCATTATTCAGCGTATACACCGTCAGCTCCTGCTTGCGAACGAACGGATGGGTAATACTGCGCCGCAGCGCCAGGCGCACATCGGCCGCCAGCAGAATATGATCCTTGGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTACAAATTTGTGCCTTAACCGTAGGCCGGATAAGGCGTTCACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [11,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //