Array 1 411839-415837 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVZK01000003.1 Peptidiphaga gingivicola strain BA112 Peptido_ging_BA112_ctg3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 411839 28 100.0 34 ............................ CCTGTGCAAAACGCGTCTTGGAGATTTCTCGGTT 411901 28 100.0 33 ............................ GAAAAATCGACCCACCTTCACCTTCGAAATGTA 411962 28 100.0 33 ............................ GGATTGCTCCTTGGGGCGTTTCACGTTGATGCG 412023 28 100.0 33 ............................ CGGTTCGATGACATACGTGACCGAAACCTCAAC 412084 28 100.0 33 ............................ CGACAACAAATTCGCGGCTCCTTGAATGTAGAC 412145 28 100.0 33 ............................ TGCGAAGCGCTCGCTCGCTCATCAGCTGATGGA 412206 28 100.0 33 ............................ CGTCCCGTCGGCGTCCTCCACGCACGCATCGCC 412267 28 100.0 33 ............................ GACGAAATGAGCTTGGACGAGAAGACTCCCGCC 412328 28 100.0 33 ............................ GCAGCAAAGAAAGGAAAACAACAATGAAATACC 412389 28 100.0 33 ............................ ATGTGCAGGCTGCGGCCAGCACGTCACACTCAC 412450 28 100.0 33 ............................ GCGATCGAAGGGCTTCTCAATGGATGAAATCAT 412511 28 100.0 33 ............................ CTCGGCCCTCCGCGCACGTCAAGAAGGCGCTGA 412572 28 100.0 33 ............................ GTACGCTAACTGGTTGATTGGCGAGATCCGCGC 412633 28 100.0 33 ............................ CGCGACTTCCCCGGCCCCTTTATGCTCGATTGC 412694 28 100.0 33 ............................ TTTAATGGGGTAGATGATGAAACTTCCAAACGC 412755 28 100.0 33 ............................ GGGATCGCCGCCGTAGAGGGATACCCACAGGGA 412816 28 100.0 33 ............................ CAAAGCGAAATCGACGTTCGTCATATAGAGGGT 412877 28 100.0 33 ............................ CCGTGCGTCGCCGACGTGTTGACGTCCGTTCCG 412938 28 100.0 33 ............................ TTTCGGGAGTCTCGTGAGCGATCTCCCGGAGCA 412999 28 100.0 33 ............................ GTCGGCATTTTGCATGGACGTTTTGTACGAGTT 413060 28 100.0 33 ............................ GTATCTCTCGCCGTCCGGCAGGATCGCCACAGC 413121 28 100.0 34 ............................ CGAGCCCGTTCTCGGCAAATACAGGAACCGGATC 413183 28 100.0 33 ............................ CCCGGGAGGGGATCATGACCAGCTCAAACTGCG 413244 28 100.0 33 ............................ GTACATGGCAGAGTCGAAAAACATCTCGTGCTT 413305 28 100.0 33 ............................ GTCTGGGATGAGGGCAATGTCCATCGACAGCGT 413366 28 100.0 33 ............................ CTTATTGTAGTACGGCATGATTTCGTTCATCTT 413427 28 100.0 33 ............................ TGCAAGATTGCAGACAAGTGGTTGACGATGGGG 413488 28 100.0 33 ............................ CATCCTCCTTACGCGTCCACGAACGTCGAGCTC 413549 28 100.0 33 ............................ GGGGTATGCACGGTATCTTCCCAACGAATTCGA 413610 28 100.0 33 ............................ CTGCACGCGTCGGCCGGTGAATTCTTTGAGTTT 413671 28 100.0 33 ............................ TCAAACGAACGGTGGACATCCGCCCGGGGGAGC 413732 28 100.0 33 ............................ TCTTCCTTCGCGCCGAACGCCAGCGTATTCGCC 413793 28 100.0 33 ............................ CGCGCTGAATTTGCGCCATCCCATGATCGTCGC 413854 28 100.0 33 ............................ TGCAGGAGACGACGGGGCCGTTTTCGAACACGT 413915 28 100.0 33 ............................ CCTCAGCTTGAGGCCTTGTATCGAAACGCTAAG 413976 28 100.0 34 ............................ GCTCCCAAGGAAGCCACCGATTGGCAGCAGCGAA 414038 28 100.0 33 ............................ GTCGGCGCGGATCCACAGGGGCTCGCCGTCGTC 414099 28 100.0 33 ............................ GAGACCCGTAGCGTGGACGTGAGCGGCGACGAG 414160 28 100.0 33 ............................ GGTGCATGACCGTCTGCGTGGCGGCCGCGCCGT 414221 28 100.0 34 ............................ TCGTCTGCTGGTGCGGATGCGCAACGGCAAGAAC 414283 28 100.0 34 ............................ TATCCCATCGTCTGCCACTTGCCGTTCTCGGAAA 414345 28 100.0 33 ............................ GTACACGAACGACCGCAGACGGAAAAACCCTGA 414406 28 100.0 34 ............................ CTTCCACAAATGAGAATACCGCTTGTCATATTTG 414468 28 100.0 33 ............................ CACAGCCGGAACCCAGCCGCCACGACCGTCGGA 414529 28 100.0 33 ............................ CAACACCTCAACCTCATGCCAATCCGGCAACGG 414590 28 100.0 33 ............................ TGGCAGGCTGTTGCCGGCGTGCTTCTCACGGTT 414651 28 100.0 33 ............................ CTCGGCGACCGACAGGAGAGACGCATATGAGCG 414712 28 100.0 33 ............................ TAACGACTTGACGTATAGACTTCACAGTGTTAG 414773 28 100.0 33 ............................ CACGGGCACGCCAGCCGGCGGGTTGAAATCCCC 414834 28 100.0 33 ............................ CTCTCTCGTCACACTCCAACGGTCGGGCTCTGT 414895 28 100.0 33 ............................ GGCCACACGCATTCAAAAACGTCATAAAGGAAA 414956 28 100.0 33 ............................ CGTCGAAGACCCGATCGTCGCCTTGTAGTCGGC 415017 28 100.0 33 ............................ CCAGATGCAGCGCCGCGCGGATTTGGCGACGGA 415078 28 100.0 33 ............................ CACTTCCTACGTGTTCGTCAACACAACGTTCGT 415139 28 100.0 33 ............................ GGCGATCTGATGGGCGTTCGACGCCATGTAGTT 415200 28 100.0 33 ............................ CCGGTCAACAATGCCATGCGAAGGGCTGTCGAG 415261 28 100.0 33 ............................ GCTGTGGCGTCCGCGTTTTTGCCGTGTTCTCGT 415322 28 100.0 33 ............................ CAAGCCGTGACCGGGTGATCCTGGGCGCGGATC 415383 28 100.0 33 ............................ GTTTGGCGACGTCGGAGGAGGTCAAGCGTCCTC 415444 28 100.0 33 ............................ TTGGCGGCCTTGAGCGCAATGTTTTCGGCATCT 415505 28 100.0 33 ............................ CTGAGCCTCCGACCATTCGCGCCCTTGTTTAAG 415566 28 100.0 33 ............................ TTCCTATCAGACATGATATTGGTGAACATTGTG 415627 28 100.0 33 ............................ GAGGCTTATAGTCCAGGTGCGGCTTCACCTGAA 415688 28 100.0 33 ............................ GCCTTGCCATGGGGTTCCGCGCGTGGGGATGAC 415749 28 100.0 33 ............................ GATATTCACCGCACGCGGCCCAAACCACTGCAT 415810 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 66 28 100.0 33 GTCTTCCCCGCGCATGCGGGGGTGATCC # Left flank : GGGGCGCTTGGCGGCGTTCGCTCGCATCGATCAGCTCGTGGCAAAGCCCAGCTTCTCGCATGCAATCGTCCAAAGCACCGACTTTAGTGCTGAAAGCCGGAGTGGCTTTGCCGATATCGTGAATGCCGGCCAACCACGACGCCAACGCTTTGAATTCGTCTGCCGGGAGGAGCCCAGAAGCAGATCCCGCGAACTCCCTTTCGATCAGATCGGGAATGGAAGGAGCAAGCCAGTTCGCTGCCAGGTGACGTGCAACCTCAGCTGCGTCGGCAAGGTGCAACCACAGAGGCAACCACCAAGCCAAGCCAGGTGAATCGTTGTCGTATTTCGACTTGGCCCAGACAGAGCGTGACTTAGAACTCAACATCAGCGTTGTTTCCACGAGGTCAATCATAGTCCTAAAACCCGGCGAAGGAATCGTTTTAAAGGATTAGGTTGGGAGTGAAGGAAAACTGGTAGGCTGGAAGACGACTTTGCCGGATTCCCGGGGGAATCTAACT # Right flank : CAGAAATCCTCATAGACAGCGGGAAAAACACAATACCATTCTGCGCACATTACAATCCTCTGTCAGTCCTGGACTTTCGCGGTCGGGCAGATTCGAGGATGGCCTTATCGAAGCCGGACCGGACCCTTCACACTTCCGGAACGCCAAGGTTTCGAGTCCAGGAAAGAGGTGAGGGCGATGGAAAAGCAATCCTTGCCCAACAAGGCAAAAGCCCGGATGCCGCGCGCACTGGCAAAACTACGCGGATCAAGGCTTTTGCCTTGCCACAGCCATGACAGCGGTGCTAGCCGCACTGCTCAACGTCCCACAGATGGCCGCTCACAACCACTTAACAGAGCAACCAATTCCCACTGTCCTTTTCACGCCCCAACGGACAAGAAAGCGCGAAGCCTCAAGTTTCGAAAACGCAGAGCCTCAAGCCTCGAAAGCCGCGGAGGGTCATGTCTTCCCATCGGCCTGGCCAGCTTCGTCGTCGGGCTCCTTGCGCGGCCTTCCCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 800608-799396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVZK01000001.1 Peptidiphaga gingivicola strain BA112 Peptido_ging_BA112_ctg1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 800607 37 100.0 33 ..................................... TCGATGTTCGTGCCGAACAGTTCGTTGCAACGC 800537 37 100.0 32 ..................................... ATGGCCAATTATACGGTTGGCGCAGATTTTGC 800468 37 100.0 35 ..................................... CTGCACTTTTTCCAGCCCGGCAATCACTCGATCAA 800396 37 100.0 39 ..................................... CCCTTCTAGGCCCGAGCGCCCTATTTAGTACTTGACGGA 800320 37 100.0 39 ..................................... CGGTCAAAGCAGGAGTCTGGTAGTGGTACACCCACCCCT 800244 37 100.0 35 ..................................... TACTGGTTGACAGCGCTCATGGTGCTGACGATCGA 800172 37 100.0 38 ..................................... TTAGACGATGTAATCGTAATGTCGGTGCACAAAGCATA 800097 37 100.0 37 ..................................... CACGTTGGGATAAATGTCAAGCAAAGGAAGACAACTG 800023 37 100.0 39 ..................................... CACAACAAGCCCTGGCCTTCGCACGGACGCTCCACCAAC 799947 37 100.0 37 ..................................... ATGACGCTTGAGCAATCACCCCACCCATCCTTTCAGT 799873 37 100.0 33 ..................................... GTGGGCGCAGAAGGATGGGGACTTGCGCTGCCT 799803 37 100.0 35 ..................................... TACTTGACGAACGTCCGGCCCCTGATCTCCTTCTC 799731 37 100.0 39 ..................................... CAATAGCAGCCCCATCGATCCCCCGGGCCTCAGACAAGG 799655 37 100.0 35 ..................................... GCAATAATCGAGGGCGTGATTTCCGGGCAGATCGA 799583 37 97.3 38 ..........G.......................... TCGGTCCGTCTCAGGTCACTGCGCATGCGCACCACGAC 799508 37 97.3 39 .....................A............... GAATACGGACGGCAGTCTCGAGGTTGTCTGCGATCTCCA 799432 37 89.2 0 ...................T........T...A..G. | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 99.0 36 GTCGGAAAGCACTGAGCACCAGAAGGTGCATTGAGAC # Left flank : CCCGATCCAGCAAGGATCGGACGACGCCGGAAGGACCCGCGCGCTTGCGAATGTAGTGAAGCGTCCATTGCTTTCTAGCCTTTAATAAGTCTGGTATGTGTTTCCGCGTCGTTGACGCAGAGGAGCACCCAATCTCCGATCCTGTGTTGTTGATTTTCGATCTGGTGCTTTCGCGTGATTTTGATTTCAGTGTAGACCTGTATCGGTTATTCCGCTGGCAAAATAGGCATCACTTTGCAGCAAAGGATTCTGGATGCCCAGTAAGACGAAGTTAACTCTGGCGTAGTCGTAAGGGGGCGATTCTTTGGCTTGGGTTCGTTGGAAGCCGGTGGCGTACTGGCTGGTAGGGGGCGTCGGCGGCGCTGGGATGGTTTGTGGCGGTATTTCGCGGTTGTGTGGTTTAATTGGACAGGTGCGAGCCGATTCGATGTGGTGCTTTCCAGGTCGGCGGCGATTTCGTTCCGGTAAACGGCGTTGTGGCGCGGTTTTCTGGGGGCGGA # Right flank : CTTGAGCGCGACGGGTCTCTGCACTGTCGACACGAGTCGAATGGAGCTGGGCACCGGGAGCATGGCGCTCTGCGGGCTGCCACGCAAGGACCACGCGGCGTCGGACGTACGGATTCGCTTCGTCCGACGCCGCCTTGCGGCCAGTAAGCGCGGCGATCGGATCGCTGCCTTCCTCAACGTCGCCCTTGAGACCGATGGTCCGGCGGCGCTTCAGGCCGGACTCGGTTACATCGCCGAGGCATCAGGATCGCCAAAGAAAGAGGAATCGCCAGGGCGCGAGTAAAGGAGTATGCGGAGCTGGCCTGGGCACCCATCCGTATTCGGCCGCTTATCCACATCTGGCCCCCGGCCGCCCACCCGCATTCGGCCGCCTATCCACATCTGGTCTCCGGCCTCTATGGCGACGTCACCAAGGTAAGAAGAAAGGAGTAAGCAAAATCAGCTTGGCCGCTCATTCGCACTTGGCGGCCGACTTGCAAGAGTCGCCTCGAACGTCGCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGCACTGAGCACCAGAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 823327-825121 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVZK01000001.1 Peptidiphaga gingivicola strain BA112 Peptido_ging_BA112_ctg1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 823327 37 100.0 34 ..................................... TGGAAAATGATCAAACTGAACGGGTTAGTTTCTT 823398 37 100.0 37 ..................................... GGAAGGCTCAGGCCACGGGCAAAACTCGTTCGATCGT 823472 37 100.0 32 ..................................... CAAAACGGAGCTTCCTCAAAACCGAGATTCCG 823541 37 100.0 42 ..................................... CTATCTCAAGCACGAAGTGCTCGCCGGCCTAGGTGTCCGCCT 823620 37 100.0 35 ..................................... TTGACGCGTTCTTGACACAGCGCGGCACCCCTTCC 823692 37 100.0 35 ..................................... CCCGAGAACGGACTTATTCGTAGGTCTACGTTTGA 823764 37 100.0 36 ..................................... CGGAACTCGGCGTCGTGCAGCCTCCGCGGATGACGG 823837 37 100.0 42 ..................................... TCGATAAGATACACGCGCTCATTAACCTGCTTGAGCGCGCCC 823916 37 100.0 33 ..................................... AAAGCGCCTCGGCGTCTTGAATGCGCTTCTCAA 823986 37 100.0 34 ..................................... TGGCGGAATTTTTGTTACTAATGAGGGTTTCGTC 824057 37 100.0 36 ..................................... TGGATCCGCGCCGACTTCTGGGAGCGCGACGCCGAG 824130 37 100.0 37 ..................................... ACAAGAATCGGAGTCACACAAACACCTCACTCGGCAA 824204 37 100.0 36 ..................................... TAGCCTTTGACCCCGCTCATGCCGACCGCCTCGCGA 824277 37 100.0 36 ..................................... CCGAAAGCCACGTCCGTCCCGCAGCCGATCGGCGAG 824350 37 100.0 36 ..................................... CCGGGAAGCATCCTCCCAAACTGAGCAACCGTTCAA 824423 37 100.0 36 ..................................... ATGGGGTTGAACACCACGAAGACCGCCTCGTTGACC 824496 37 100.0 34 ..................................... CGGTCGCTGGCCAGCGAGGACGAGATCTTCACGG 824567 37 100.0 34 ..................................... TCTTCAGGTCGCCGTTGAGGTCTCCCATGGAGAA 824638 37 94.6 34 ............TC....................... AACCACTGGAAGACGACCTCGCTCCACGCGCCGA 824709 37 94.6 40 ............TG....................... GAAGAGGAACGGAGCGTTCTTGAGACGCTGGATCATGCCG 824786 37 97.3 38 ....................................T ACGAGAGGCTGGCCCCGTTGCTGCCAGATCATCATCGC 824861 37 94.6 37 ............TC....................... GCGTCAGTATCGCCAATCAGCACCCATCCCTGACCAG 824935 37 91.9 36 ............TG..................A.... ATCTCGATCTGCGGGCCGCACTCCTCGCACCACCCA 825008 37 86.5 33 .......G....TG...G..............A.... TCTTCAGGTCGAGCATCCCGTGCCCCTTGTAAT 825078 37 81.1 0 .......G..C.TG...G...........G......T | G,C,TGGTG [825084,825087,825090] ========== ====== ====== ====== ===================================== ========================================== ================== 25 37 97.6 36 GTCGGAAAGCACCAAGCACCAGAAGGTGCATTGAGAC # Left flank : TACGGCTTTGGACCGCCGACGTCGTGCGCGGGCCGCGCGGCGAGGGCGGGAATGCGGCGTGCGCGCTCGGTCGAAATTCCGGACGGAAGGTCGAAGATACGCCCGACGGCGGCGTGCAGGCGACGCGGCGTGGCATGGACGGCCCCCGGGGAGTCGAACTGGATGAACACTGTGCTCGGCATGCTTCTGTTCTACCCGGTATGCCGGCCTATGTTCTACCCGGTCCACCGTGGCTGCGCGGGGGGCAATCGATGGTGGCCTTGACTGCGGTGTTTACCGTGGCGTAGTCGTGAGGCGTCGGTTTTTCGGCTTGAGTTCGTTGGAAGTCGGTGGCGTACTGGTGGGTAGGGGCGTCGGCGGCGCTGGGGTGGTTTATGGCGGTTTTCTGCGGTTGTGTGGTTTAATTGGATCGGTGTGAGCCGGTCGAGTGTGGTGCTTCCTAGGTCGGCGGCGATTTCGCTTCGGTAAGCGGCGTTGTGGCGCTGTTTTTTGGGGGTGGA # Right flank : TTGGGGCGAAACCGATTCCCTGCACACGGAGTACAATCCACGCATGCGGAACCTTGCGAAACTAATAGCGGCATTGACGGCACTGACCTTCATGAGCGCATGCGGCACGACTCGGAGCAGCGAGAGCACTGCTCCGACGTCGGCCTCCGACGGTGACGTCGCAGCCACCCAGGAAGCCGAAAACGTTCATAAAATAGGCGAAATGCACCGCTACTCCGATGGGCTTGACGTCACCGTCCAGAAAATCGAGTCATTGCCCGAGGGAAGCCTTGATTCCGATGTCAACGGCAGCCCCGTTCTCATCACGATTATTGTCCGAAATGGCACCGGCAAGACCGTGGATACCGCCTCCTTCGGCGAATGGATCACAAGTGGCGGCGTTGAAGCTACCACCTACACTGACCCGGACATCGGCGCGCAAGACCCAACCTCAGATCTTCTGCCGGGCGGCACCATCACATACAAGGTGGCTGCTATCGTGAACGATCCGCAAGCGATTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGCACCAAGCACCAGAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 826760-827163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVZK01000001.1 Peptidiphaga gingivicola strain BA112 Peptido_ging_BA112_ctg1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 826760 37 78.4 37 ....AT..T..TCC.A.A................... ACTTCGGTGCCGTGCTCGAGCCGGTCCAAATCAAGCC 826834 37 94.6 36 ...........T.....A................... CCAGTCATGGTCGGTCCATGTCAGCGTCAACGTCCA 826907 37 94.6 38 ....C............A................... ACGTTGAGGCGGTACGCGAAAATCTCCGGGGTCTCGTT 826982 37 100.0 35 ..................................... AAGTCTCTATCCTCGGGGTTCATGTCCGTGTTCCG 827054 37 100.0 36 ..................................... AAGACGTTCCTCGTATGTATGTCCGAGAACGCCATC 827127 37 81.1 0 ..........G...T..A...A.........CA...T | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 91.5 37 GTCGGAAAGCACTGAGCGCCAGAAGGTGCATTGAGAC # Left flank : GGCTGCCAGTTTCCTGCGAATGACGAGGGGGCGACCGCTGCTGAACTCATAGTCCAAAGCCGTCCAGCATCCATGACACACGGACAAGATCTAGGAAAGGCGGGATCGGGAAGGCGGTAGTCCGTCGTTGGGACGGTTGGGTGTCTGGCTGTTGAATGCTTGCCTTGTGGTGCTTGCTATGTGTTTCGGTGTATCGACTTTGCTTCGATGCGCGGGAATCTTGGTTGTGCGCGTTTGCTGGTTATTTGCGATGGGGCGACTGTGCACGCTCGAATGCTGGGAAAGTTCCGGCAACAGGAGGCTTGCCGGCGTGGGCCTGTGAAAAACCGGAGCGGACAACGGGGCTTGGACCGTCGGTGACGCATGGCCGTTTAGTGGCGGAATCCTGCGAGAGCATGGTCTAATAGACATAGTGTTTGCCGACGAGTCGGGGCGCGTGAATCGCCCGTGGCGATTGCCGTCGAATAAACGGCACTGTGGCGCGGCTTGCGGAGATGTTA # Right flank : TCTGCTTGCCAGAGGTGAGCTGAATTTGTGCGGCGGCGCAGAAAGGGCGTGTGCCTCAAACACTCGAGGCGCACGCCCTATTGAGTAATCGACCGCTGGTTCCCATGAATGACGGCGGAGTTCCCGTCGCCCGAAGGCCCAGCTTATTTCCGCGTGGACTCCAGCGCTTCGCGCACCGCCTGCTTTTGGCGGGCCGAGGTCTGCACGCTCGGGTGCCGCGCATCCCAGTAGGAAATCGCGAGGGCCACGCTGATGAACGCCGCGAGCAAGGCGCACCCGGCGACCATCGCCGTGATGTAGCTTTGCCCGGCAAGGCTGTAGAACAGGCCCGTGCACGCCGCGGTTCCGATCGCCGTGGCGATGCGCTGGCCCGTCTGCATGATTCCCGACGCCGTCCCGCCGCTTTCCACCGGCACGTCGCGCAGTGAAAGCGCCTGATTGGGCGAAGTCACCCAGCCAATGCCGAAACCGACGATCGCCGCGCCGATCGCGAACCACCA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGCACTGAGCGCCAGAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //