Array 1 105395-101459 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML660090.1 Exilibacterium tricleocarpae strain R142 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105394 29 100.0 32 ............................. TGCTAAACGTACTTAGAGACCACGCAAGGGCA 105333 29 100.0 32 ............................. AAAAAGGGGTCGTAAATGCTGGATAAATTACT 105272 29 96.6 32 ............................T TTCTACAACGCGCGCTTAACGTGTTGAATAGC 105211 29 100.0 32 ............................. GACTATAGTTTCGAGATTTTCGGCCAGGAATT 105150 29 100.0 32 ............................. CCATTCGAATACGCTTATAACTTTCTCTACTA 105089 29 100.0 32 ............................. ACATTTGTAGTACGGTCCTTTTCCCGTCTCCT 105028 29 100.0 32 ............................. ACCGGTAGCCACTGTAAGCACTGCCCAGGGCG 104967 29 100.0 32 ............................. GTACCCCCGTTACCGCGCATTTCCATAGGTGC 104906 29 100.0 32 ............................. GCGACTGTTTCGAGCCGCAAACCACCGACGCC 104845 29 100.0 32 ............................. CGTTCGGCCATCCGGTAGGCCCGGGTAGTCGC 104784 29 100.0 32 ............................. CAGATACTAGACCTACGCGGCGACCTGGTGCT 104723 29 100.0 32 ............................. TGGTATGCAGAGTTTACAGTAGTGCAGAGCGG 104662 29 100.0 32 ............................. CCTCACTGCCTCGCGCTTTAGGCTTTAAATCA 104601 29 100.0 32 ............................. AGACCTGATCCACCGTATCACCTGCATGTCCA 104540 29 100.0 32 ............................. GATTTGAGGAAACCGCTCGCGCTTCCAAAACG 104479 29 100.0 32 ............................. GCATCCTCAGCACGGTTACGACCTCTCTCTTG 104418 29 100.0 32 ............................. TAATGTTGCAGGCATATCACAACGACCCGGCA 104357 29 100.0 32 ............................. CAAAAATCGGAACCAGGGGGAATCGGTTATGC 104296 29 96.6 32 ............................A GAAGAGTTGTAAGCGCGGCCCCTGAGTCACCA 104235 29 100.0 32 ............................. CCATGCAATTCATTGGCTGGTCATATGTCATT 104174 29 100.0 32 ............................. GGTGTTGTTGAGATTCTGACTAGGAAGTTTAG 104113 29 100.0 32 ............................. CATTTCATTTTGGTGTATCTGACAGGGTAGGT 104052 29 100.0 32 ............................. CTGTGGCCAACTCTCTTTTTGAGGGTGATGAC 103991 29 100.0 33 ............................. CAGATTTACCGAGCAGAAACCGGTCAGGCTGGC 103929 29 100.0 32 ............................. CGAGGCGCCGGCGCTGGGTCCGCGTTAGTTGA 103868 29 100.0 32 ............................. GATGGGGGTTATCTTCTTCGGATTTTGATTTT 103807 29 100.0 32 ............................. CGAGGATCATCGGGGCTGAACCGGCGCTTGAA 103746 29 100.0 32 ............................. TCTCAAGCGATCCCGAATCCGCGAGAATTCCC 103685 29 100.0 32 ............................. CTTTCGCCGCGGAGTTGCCCCTCTGCAGCCAA 103624 29 100.0 32 ............................. ATAGTAGGGATCAGGAAATCGAAGCGCTGGAA 103563 29 100.0 32 ............................. CTATGACCGCTGTGGCGGGTTTTGGCATAGTC 103502 29 100.0 32 ............................. AAGTATGATAAAAAAATACGTTATTTCCATTG 103441 29 100.0 32 ............................. TGTGCTTTCAGTATTTCTGTGTATCGTGATCC 103380 29 100.0 32 ............................. TACAAAAAGGTTAATCAACATGGTATTCAAGG 103319 29 100.0 32 ............................. GTTTTTTTTATGTTCTCCGAAGTTTTTCCGGA 103258 29 100.0 32 ............................. CACGCAACAAAGCACAAATAAAAGCAGCACGA 103197 29 100.0 32 ............................. GTGTTGCGGCTAGTTCGTCAGTGATAACCGCC 103136 29 100.0 32 ............................. CGATTGCCGACGTTCAGAACGCCCTGGATACA 103075 29 100.0 32 ............................. CCGTTGTCATCTGTTGTTGTGTTGGATAACGA 103014 29 100.0 32 ............................. CCAGTTTTCACCACGCGGTAACGGGCTTGAGT 102953 29 100.0 32 ............................. CAACATTTCCTGATGCTCATAAGTTTCAATCG 102892 29 100.0 32 ............................. GTTATGCTTTGTCATGTCATTTTGCATCCGAT 102831 29 96.6 32 ..............T.............. TGACGTTGGATTGGTATAACAATGTCTTTGAA 102770 29 100.0 32 ............................. GAATTTGCGGGAAGTTTAATCGCACCCAATCA 102709 29 100.0 32 ............................. GCCGGCCAGCGCCTCCTCCTGGTTAACATCGC 102648 29 100.0 32 ............................. GCCATCAGGAAAGCAACAACTACCGTACTGCC 102587 29 100.0 32 ............................. CCACTTGGCTATACGCATTCGGCGTGGAACTG 102526 29 100.0 32 ............................. CGCTTATAACATCTAGATATTAAGGAGAAAGC 102465 29 100.0 32 ............................. TGCACTAACTCACATATGTGCCGCCGGTCTAG 102404 29 100.0 32 ............................. ATTGAGCGCCCCCAGGTTACGAAATATATCGC 102343 29 100.0 32 ............................. GCGTTTACTGGAGTCAACCCGCCGAGCCGACC 102282 29 100.0 32 ............................. TCCTCACACCAACATGATCGGAGTATTTAGAG 102221 29 100.0 33 ............................. TTTAAACCCCCAAAATCCACTTTAAGCCCGGCC 102159 29 100.0 32 ............................. AACGCCTGTTACCGTGATTCCTTTTTCGCTTT 102098 29 100.0 32 ............................. GCCGCCAAGTACCGCTGTACATAGAATACAGT 102037 29 100.0 32 ............................. TTTGGATGAATAGCGCCGCACCGCAAACACCT 101976 29 100.0 32 ............................. TTAATGTATGCGCGTCTTCTGCGATACCGTAG 101915 29 100.0 32 ............................. AGTTTAGGCTTTAAAACAGATCGGACGGTTAG 101854 29 100.0 32 ............................. TTGGTCAACTGCCGTTGCAGCCCACCGATAGA 101793 29 100.0 32 ............................. GGAGCCGTTCCTGCCGCCCCCGCAGCGCCTGT 101732 29 96.6 32 .........G................... CCGATCAAAACACCGTGCTCGGTAAACGTCTT 101671 29 100.0 32 ............................. GCTATGAGACGCCCATAGGGCGATTAGAATAA 101610 29 100.0 33 ............................. CCAACTGGTGGCCGGGGCATATTTACGGCAAGC 101548 29 96.6 32 ...........T................. GAGGTGGGCCGGAACCGCAAAATGTGGTACAT 101487 29 86.2 0 ........T..A.AT.............. | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.5 32 GTGTTCCCCACGGGCGTGGGGATAAACCG # Left flank : TCCGCTGATTGAGTCGGTTTTGGCCGCGGGTGAAATAGAGCCCCCCAAACCGCCGCCGGATGCCCAACCGCCGGCAATCCCGGAGCCGCAGTCTATTGGTGACCACGGGCACAGGAGCGGGTAGCGATGAGTATGGTGGTTGTGGTGACCGAGGCTGTGCCGCCCAGGCTCCGGGGCCGGTTGGCGGTCTGGTTGCTGGAGGTACGTGCAGGCGTTTATGTGGGCAATGTTTCTCGAAGGATACGGGAAATGCTATGGCAGCAGGTGGATACACTGGCTGAAGATGGCAATGTAGTCATGGCCTGGTCCACCAATACGGAGTCGGGTTTTGAATTTACCACCTACGGTCAAAACCGGCGTGAACCTGTCGATCTCGATGGTTTGAGGCTGGTTAAATTTATGCCGGTGCTGGAATAGGCACTGGTGTGTATCTGGCCGCGATTGTTGGTAGAATTTCCTCTCGGATAATTGTTCTTTAAAAACAAGTGGATAGAGTTAGT # Right flank : GTCGGTGATGAGGTACATCCGTCCTATAAGGGCGTTCCCCGCGAACGCGGGGTGTTACTACAGCATAAAAGTAGTAGAGTATTTTCCCCGCATATGCGGGGTATAACAAATAGTGAACGCACAAATCAGATTGCGGATAAATAGTGATTGACAACTTGTGCTAACCACAAAATCGACATCCAACTAACCGTATCGCAACAGTATCCAAGCCAGTGCACGAGCTGCAGTGATCATGGCATCATGGCCAGAGTCCAGCAACAGGTAACGCCACTGCGGGTCCTGTTCGATACGGTCTTTAATCGGATCGCCAGCTTTATAAATAGGATTCTGCGTGCAGCGAATAAAAACTTTCTGTAAATCTTCCGCGCCATTGTTTTGATAATATACGGGTTGCAAAACCGTCCCCAAGGGATCGTCGACAAGCCGCCGTTTTACCCAGGCTGCATGACGATGGTTTTCAGGAATTCCCAGAAAATCCAAATCGGGAACAGGATAAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163277-162332 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML660090.1 Exilibacterium tricleocarpae strain R142 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163276 29 96.6 32 ............................C TCTGCGGCCAGGTCTACGATAGTTCGGCTACG 163215 29 100.0 32 ............................. GTGTTAGCCTTGGCGGTTTCCGGGTCGCTAAT 163154 29 100.0 32 ............................. CGTCGACCGCGCTTGATATTGCCATGGTGTTA 163093 29 100.0 32 ............................. TGTACGCCCTAATGACGAAACCGTCAACATGA 163032 29 100.0 32 ............................. CATGGAGAGGCAAAACCAATGATAACGGGAAA 162971 29 100.0 32 ............................. AGGTATAGATACAGCATCCCCTTTCTGAGGAA 162910 29 100.0 32 ............................. CAAATTCCCCTATAGGGGAACCCTTTTTTTTG 162849 29 100.0 33 ............................. AATTTTGATGAGCTGGCCCAGGCGTTAGCAGGC 162787 29 100.0 32 ............................. CTTTTGATCAATTCGATCCAGACGTTCTTCAA 162726 29 100.0 32 ............................. CTTTTGTCATCAGCGGTAAAGCGTGTCTCGAA 162665 29 100.0 32 ............................. TGAAGCTAGTTATATTGTTGATAGCCAGTATA 162604 29 100.0 32 ............................. GGGTCTATCACCAACCGGCCAATGGACCAGCC 162543 29 96.6 32 .........A................... TACCTATCGTGATATTCGGGGCGGACTTTAGT 162482 29 96.6 32 .........A................... GCATTGCGCCGCTCCAGCAGCGTAGCCCCCTG 162421 29 89.7 32 .........A...AC.............. GCGGGACAGCTGGCAGGCAATATAGGCACTAT 162360 29 82.8 0 .........G..T...C.......G..T. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCTCGGGTGTGGGGATAAACCG # Left flank : TAGGCCGGACTGTAGTGGTACACATTGTCCTGAACCGATTGTTTGACCATGCCCTTCTTAAACAGGCGCATCAGCATAGTGCGGACAGTTTTCGGGTGCCACTGCCGCGCCGGTGCCACTTTTGAAGCGATTTCGTTGACCGGGGCCGGCGCGCATTCCCACAGAACCTTCATCAACTCCCATTCGGTATCTGATAACTGGGGTGCTTTGGACATAGGTTTACCTTGTTGTCTTACAGTTGTAATCCGGTCTGATCTTACAGGTGTAAGTTTGTGCTGTCCATACTTTTCAGTAACGGCAGGTATTTTCTGTACCCTGGGTCTTGTCTGTAGGGGGCATTTATCGGGTTTTTATGTATGTGTGCTCTGTCCTATACATACAGGAAGCGGTGGAACAAGTTAAGATTCGGGTGGCGGGTGCTTTACTGTTGTCGGGTGTGGGAAGTGGGTAGAAGTTTGATTGTCGAGTTTGTTCTTTAAAAACAAATATATAGAGTTAGT # Right flank : CACACCGCGGAGTGCAAATATTTACATACAGCGTGCTCCCTACAGGGGGATAGCAGTCGCAATCCAGCGGCGGGGATCTATAGTTCGCTGTTTTTGCGGGCGCTGGCGGAAGTCCGAGGCAGCAGTCAAGATGGACTTTTTGAATGGTCGAACAAAATTGCAGTGCCAGGTATCTCGTCAGCCAGCCGGCGGTGTATTATCGATTTCGACAGTGGCATCCCAGATTCTTTGCCAAAGCAGAGACAACAACGACAGGTTCAATGGCGTCTCGACTTGCGTGGGTGGCGTTGCAATGGCGTGGGGATTGGATAACTCACCGACCTTAAACTGAAAGACATAAGTCGGCTCCAAGCCCATGCGCAAATCGCTGACAATCAAGTCTTGCTGTTGCTGCTTGACGGCAAAAAAACCTTTGCTGAACCACTGTAGACGCTTGACTGCCCATGTGTTTTCAATACCGACAAGCAAGTCGTTTTGGCTGCGGTAGTGACTAAAGCGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCTCGGGTGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //