Array 1 836407-838204 **** Predicted by CRISPRDetect 2.4 *** >NC_014644.1 Gardnerella vaginalis ATCC 14019, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 836407 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 836468 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 836529 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 836590 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 836651 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG G [836673] 836713 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 836774 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 836835 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 836896 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 836957 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 837018 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 837079 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 837140 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 837201 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 837262 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 837323 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 837384 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 837445 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 837506 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 837567 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 837628 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 837689 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 837750 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 837811 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 837872 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 837933 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 837994 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 838055 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 838116 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 838177 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //