Array 1 137126-139197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011391.1 Faecalibaculum rodentium strain ALO17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 137126 31 100.0 40 ............................... TTGATGACGTCGTCCAAGTCCGTATCAGGATCCGCATTTT 137197 31 100.0 39 ............................... AAGTTTAGATTTCTTAAACATTTTTTTATTTCCTTTCCT 137267 31 100.0 39 ............................... AATATAATTCTTGGTTTGTAAGCTCATAAACAGGCATAT 137337 31 100.0 36 ............................... TCCACGTGTTGCACCAGTAAGAACCAGAATCGTTTC 137404 31 100.0 36 ............................... GTTTTCGATTTTCAGGCTGTCCCGCTCCTGCTGCTC 137471 31 100.0 38 ............................... CTGCCATTTCTTTGATGATTCCCTGCGTCATTGCTTCA 137540 31 100.0 39 ............................... AAGTGTTTCTGAAGTTTAGATTCATTAAACATTGTTTTA 137610 31 100.0 34 ............................... AATCTGCTTCACGGACAGCTTTCTTCAGATTACG 137675 31 100.0 36 ............................... CTGGAGCTCTGCTAGCACGTCATCAAACTCCGGATC 137742 31 100.0 37 ............................... CTGAAGTTTTTGGTATCGTGCCTCGTTCAGGAAGTTG 137810 31 100.0 35 ............................... TGGTTGTATCCTCCTTACATCCATTTCCAGTTACG 137876 31 100.0 37 ............................... TTTGTCGCTTCAATGATGTTCATGTGTGTGTCTCCTT 137944 31 100.0 36 ............................... TAGAATTCGTCCAGGTCTTCTTTGCTGGGAAATACC 138011 31 100.0 37 ............................... CGATGCCAGAGTCGTCAAAAAGATCATGGGCCATAAG 138079 31 100.0 34 ............................... CAGTCCCAGCCCTCAGTCAGAAGCATGCTGTTGA 138144 31 100.0 37 ............................... TCTAATTTGTCGTAATCTGCTGTCTGCATTTCGTCTT 138212 31 100.0 36 ............................... TGTTTCACGGATATAACATTTTACATCTGCGTTTGT 138279 31 100.0 36 ............................... GCAGCGCTGTCACCATCAATCTTCCCCGGGCATCGT 138346 31 100.0 35 ............................... TTTCCCTGGATGATTCGTTCATCCAGTTTTTTCTG 138412 31 96.8 42 .........................A..... TGTAAATATCGTTAAATCCTTCCCACTCTGCCACCTCTTCTA 138485 31 100.0 37 ............................... TCAATAGCCGTTGTCCTGCCTTTCGTGGTTGACCCGG 138553 31 100.0 39 ............................... AAGCAATTTTCCGTGTGGCACTGAGAAGATACAAATTTG 138623 31 100.0 39 ............................... GTGATGAGCTGGAAACAATTATTGATGGCGGTTGAAACA 138693 31 100.0 43 ............................... TTTGTAGTTTTCCATGTGTTTACCTCCTAGGCTATTCCAGCCA 138767 31 100.0 34 ............................... TTTAACCAACTCCGATAACGTCTGACTTGCTTTT 138832 31 100.0 36 ............................... TCTGCTGCCTGATAATTTTTTGTCAGCAGGTATTTC 138899 31 100.0 38 ............................... GACAATCTTCATCCATTTACCTGTCAGAACGCCTTCAT 138968 31 100.0 35 ............................... GTAATCTCTGCGCTGACCATGTGGCTCTGCGCTGT 139034 31 100.0 37 ............................... TAAAACTTTGGCGGTAAACACTGTGGCCGCTCACAAT 139102 31 96.8 34 .............................A. CGCTCCAGTCACCTGCAGCTCTGACCCCATCCAG 139167 31 83.9 0 ..............C.G..C...G......A | ========== ====== ====== ====== =============================== =========================================== ================== 31 31 99.3 37 GGTAAATATTGTTCTTATTAAGGATTAACGC # Left flank : CCAAAGCCATGAGCTGCGTCATTGCCCAGATGATTGGCGGCGTAACCGAACCCGGGCTCTATGGCGTGGGATTCCAGTACAAAAAGCCCCTGGCGGGGATGATGGCCGGGGGATTCTGCGGGGCGCTGTATGCCGGCATTACCGGTGTCGTGTGCACCAACCTGGTACCCGTGGCGAGTTTACTGGTGTTCCTGAGCTTCACCGGGGCCTCGGCCATGAACCTGGTCAATGAGATCATTGCTGCGGCCATAGCCTTTGTTGTTGCGGCAGCGGTGACGTTTGTGCTGATGAAATCGGGGGAGAAATAGGTGCAGAAGGGATAAAGTTTATCGACGATTTGGCAGATTCAGCCTTAAATGAGGGGCGAATCTGCCTTGTTTTTGAGGGAACGTCGATGGTTTTTGGCGTATAATCAGCTTGTATCCGGAGACTGGGACAGAAAACGAGTAGTTTTGTTCATGAACTGAAGACAGACTATGATTTTTGTCCGCGAGGTCTCA # Right flank : AAGGAATGGTTCTGTCGGTACCAGTCTTCCGACAGCCATCAGAAAAAGACCACTCCGCAAGTTTCGGGTGGTCTCTCTTTCTGATATGGAATTTTCACATGATAATGGTCCGGTCCTCCGGTGCCCGTCCATAGGAGGTGGTGTTGAGGTCCTTGTCATTATACGTAAAGTAGAAAATCACCGAGTCCTTTTCCGAGGTCAGCTCCTTCAGCTCATTCTGGAGTACCCGGAACTGTTTCGGGGTCAGCACTCCCTGAAATACCGAATCCTGTACGTGGAACAGATAGCGTCGGAGCACTTTCATCAGCTTGACGCACTTTGCTGAATCCACATCATAGACACAGATAACGTTCATGCTTACCACCCGACTTCAAAGAAGCGCAGATCTGCCGAGTCTGGGTCCTGGATGAATCTGACCAGACGGTTGATGTCCCGCATCATGATGGATTTATAGGACAATGAGCGGCCGTCGATATTCACAGTTGTTTTGAGGAGCTGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAAATATTGTTCTTATTAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 149152-149859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011391.1 Faecalibaculum rodentium strain ALO17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 149152 31 100.0 41 ............................... TAACCAAGACTTTTCCATCTTTGTGGTAAACTGTGATATTT 149224 31 100.0 37 ............................... CGTCAAAGAGATATTCACGGATCTTTACGTCTTGTGT 149292 31 100.0 33 ............................... CCGCCATTTCTGCAATTTCCTAAGCGTCTTCCG 149356 31 100.0 36 ............................... ATGTTTTCTTTATCAGTCGCTTTAGCAAAGTTGTAA 149423 31 96.8 37 ................G.............. GGTACATAACTGCATTTTCTACAGTCTCATAGGTTGT 149491 31 96.8 36 ..........A.................... TTCCACATTTCATAGGCAGCAGATTCCATCTTGTAC 149558 31 100.0 38 ............................... TGGAAATCACGTCTTTCCATCCATCGGAATGCTTGTCC 149627 31 100.0 36 ............................... GTCATAGTTTCGAGGGTTTTGAGCTCTCTGAAGAGC 149694 31 100.0 38 ............................... CAGTTATAGGCTTTGATAGCCTTAGCCACAAGGTCAGT 149763 31 96.8 35 ........C...................... GACAAATCCGTACCACTTATAACTGAAGACAACGT 149829 31 90.3 0 ..............C.............G.A | ========== ====== ====== ====== =============================== ========================================= ================== 11 31 98.2 37 GGTAAATATTGTTCTTATTAAGGATTAACGC # Left flank : GGAAATTTCATCTGCATGTTTTTTGTATATGACTTCCTGCAGGTAGCGCGCTATTTCAATCTCTTCAGGTTCGTTTTCAAAATAGGTGCAGGCTTCCCGGTAGCCGTTTTTGCCGCCTGTACCCAAAAATGTAAAATATTGCATAACATTCCTTTCCTGGACTTTCTTCTAAAAGGGCAGAGCCCGATTAAGTAATAGACTCATTAGTATGTCACAAGGACAAATAACATTATAGCTTACCGCAGTTCAATGTTCTCTGTATTTTAAGCGCTTTCAACAGAAAGAGATAACGAACGAAAGACAATTCAGTTTAGTCTTAAAGTGATTTATCGACAATTACATAAAAACAAGCCGGAATTGGAGCAAATATAAGCCTGTTTTTCCATCAGCGTCGATTGAAATGGGCTTATAATCCTCTTGTACCAGCCTTTTTTGCAGCAGGAAACTGGTTTTGTTCATGTATGGGAAACAAAAGGAAGGGAACTGTCTGCGATAAGTCA # Right flank : ATTAACGCGGTTCCTCCGGCACTTCGGGAATATCTGGTTCTTCAAAAATATTGTTCTTGTTGAAACGGGTAGATCCGGCCTTAGATGGAGGCGGATCTGCCTTGTTTTCTCGTTCGCTGCCGGTTGCGGCCATTCGAAACATGAAAAAGCCAGCCAGGACTCTCCCTTAAGAGAAAGTGCCGGCTGGCTCTTTTCACTTGCTTTGTTCCAGGCTTGACTGCTTAAAAGTGCTCCTTGTTGGCAATCATCGACTGCAGCTTCACCGCGATTTTGTTCTGAACTGTCCCGAGCTCCCGGGACCGCGGGTCCTCCTGCACGATGTGCAGGGCTGTCGGCAGTCCGATGATGTTCAGCATCTCGAAAGGCCCGTAAGGAGTGCCGGTCTCCGTCTTGATCCCCAGGCCAGGTCGATGGCCTGGGGATCGGCAATTCCCTCTGCCACCAGGGTCTAGGCCACATTCAGGAACGGAATGAGCAGCGAATTCAGGAGATATCCCGCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAAATATTGTTCTTATTAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2170632-2168106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011391.1 Faecalibaculum rodentium strain ALO17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 2170631 24 100.0 37 ........................ CATTCAGGCATACGACTATCCGGAAGCGGTTGCCATG 2170570 24 100.0 37 ........................ TTTACTGCATTGAGCGTGAATTGGGCGTATTAACATG 2170509 24 100.0 37 ........................ CATCGGCACTCACAAGTGCCGGGCAAAAGGCTACATG 2170448 24 100.0 37 ........................ TCCTTTTCCGTTCGTCGTCTTTGATCGTGTCGCCATG 2170387 24 100.0 37 ........................ GTAATGCCGGACCTGGCTGCTATCTCACGTTGTCATG 2170326 24 100.0 37 ........................ TTCAGCCAGGTACTCTTTCCCGATTTCGATATACATG 2170265 24 100.0 37 ........................ TCCGCTATCCAGAACTGGAACCAGACAAGGAAACATG 2170204 24 100.0 37 ........................ TCCAGCTTGAGGCACCGCATAAGCCACATGAGCCATG 2170143 24 100.0 37 ........................ CAGCGGTTGCGACGCTTGCCGCGGTAGCCAGGACATG 2170082 24 100.0 37 ........................ TAGCAAGCAAGGGGTTTATGTACACATAAATACCATG 2170021 24 100.0 37 ........................ TCGCAGATCCGTGCATGGGACAGGGGTTGGTTGCATG 2169960 24 100.0 37 ........................ GCTCTGTTTTGCAAGTTTGCAGGCTGTTGCCAACATG 2169899 24 100.0 37 ........................ GGGGAACCGCAATGAAGGGGACGCCACCAGAAGCATG 2169838 24 100.0 37 ........................ CTTCTGCAAGTCCGGACGCATTGTAATGTATGCCATG 2169777 24 100.0 37 ........................ GGCCATCAGGCTCAGGTCCCCGCGTCTTCTGGGCATG 2169716 24 100.0 37 ........................ GCAGCGTTTTAATCGCTGCTTGTGAATGTTTGCCATG 2169655 24 100.0 37 ........................ TACCCTCGGAGGTCTGCCGGCCTTCGTTGGGGGCATG 2169594 24 100.0 37 ........................ TACTTACTGAATCGAAGTCAAGCGCATGTCTGGCATG 2169533 24 100.0 37 ........................ GAAGGCAGCATCATTGCGCAGTGCCTGGGTATCCATG 2169472 24 100.0 37 ........................ TCAAAGCCCGCATCGGCCACTCACCGGATGAGCCATG 2169411 24 100.0 37 ........................ TGACGAAACAGGAAGCGGGACGCCAGTATTTGGCATG 2169350 24 100.0 37 ........................ TCCGTACGCAATCAATCCGCGGTAGTCTGCCTGCATG 2169289 24 100.0 37 ........................ TTATCAGAACAGGAAGCGAAGCGGCCGCGTCGCCATG 2169228 24 100.0 37 ........................ CACGCCATGCTCAAGAAGACGCTGGACTATGTGCATG 2169167 24 100.0 37 ........................ CCTCTTTTGTCCCTCGGGACACCGAAATCGAGACATG 2169106 24 100.0 37 ........................ TGCGGTCAGAGGACTGATTGAAAATGTATCCCTCATG 2169045 24 100.0 37 ........................ CTCAAAGATGGAGTCGAACTGGCTGATGAAGCGCATG 2168984 24 100.0 37 ........................ CTGGGGGATTTTTTTGTGCTTAATCGGAGAGACCATG 2168923 24 100.0 37 ........................ TATGCCCTGCACAATGACCGGAGCAGCCAGAAACATG 2168862 24 100.0 37 ........................ TTCGTCCAGACTGATGGGCAATCCTGAGGTCAACATG 2168801 24 100.0 37 ........................ TGGGAGCAGCGGCATGGCGAAAACCCCTACATGCATG 2168740 24 100.0 37 ........................ CTTTGAAACGACGCTTACTGCACTCAGGGAAGACATG 2168679 24 100.0 37 ........................ TCAAGGTCAACGCCCTGCACACAATCTTGTCAACATG 2168618 24 100.0 37 ........................ CTGTCCCGGAACATCAAACAGTGCGCACGGCTTCATG 2168557 24 100.0 37 ........................ CGTGATCCCGGCGCTGACGGCGTTCATCGACTTCATG 2168496 24 100.0 37 ........................ CAAATCCAGAAAGCAGGAGGAATTGGAATCATCCATG 2168435 24 100.0 37 ........................ TAACCAAGGCCGAGGCAGCACCACTGCTACAGCCTTG 2168374 24 95.8 37 ........T............... TCTATCCAGCCGTATTTATCCATGCAGTAGTCGCTTG 2168313 24 95.8 37 ........T............... TTCGGGTCCAGAATCTTTCCATCGTTGATAACACTTG 2168252 24 83.3 38 ........T.......C.....TT TTCCACGAGAGCAACCAGAACTTCGAAATCATCACTTG 2168190 24 95.8 37 ..........T............. CTCGACAACATCGCGTTCTCCACTGATTCCAAACTTG 2168129 24 70.8 0 .........GT......C.TT.TT | ========== ====== ====== ====== ======================== ====================================== ================== 42 24 98.6 37 TCCCCGCACCCGCGGGGGTGATCC # Left flank : AGGATCAGATTATTGAAATCGCCTTGATCAAGGTTGTCGATGACGCCGTTACTGAAGAATTTCGGAGATTCATTCAAGTTCGTGGAGAAGTATCGCCATTTATTGAACAGTTGACCGGAATAACGAATAATCGGCTAAAAGCCGAGGGTATAGGATTAAAACAGGCTTTAGAAGAATCACTGGATTTTATTAGATCAAATCCGCTGGTTTGTCATAATGCAGACTTTGATCTGGGATTTCTGAGAGAGGCTTGTGTAAAAGAAGGAGTTCCGTTTCCTAATTACAGAGTTTTCGATACACTTAATCTGGCACGACAAAAAATAACCGGGATCAAAAATTACCGGCTAAATACTCTGATTGACTGTTTAGGACTGATGCCTCATCCTTCTCATGAAGGATTAGCCGATTGCCTGGCTGTACACAGCTTACTGTGTGAGTTAAAGAAAATCGGCTGTGGTAAACAGGAGAAGCCCTTTACATAAAGGGGTTATTTAGACATG # Right flank : TCATTCATGGACCTCGCATGCGAGGTCCACCCTTGGATCAGTGAAACTTAGATGGGGCCGTTCCGGCCCCTGTTATATTTATCTTGCCGGAGCTGGTGAGAGCACGATACACATTTATTCCATGCGGACTTCTCACACAGTCTTCATGAGATTGTTTTTTTATAAGTCGCCGTTGATCTAAATAGTATCCCTGGGTAGAAATTCATCACGAATATTCTGAACATTTTGTATAGGCTGTCGGTTTTTTCTCGACAAGTTCAATGGATGGATCAACTTCCACTCCGGCATTTTTTTGTTTGAGAGGAGTTTTCGACCATGGCTGTTCGTAACAGAAAACCGGTCTGTGTCGGTTTGGATGTCCATAGAAATAATGTCTGGGCCTGTGTGACCTTCAAAGATCCGGCCAAAGGGAAAGACGGGCTTGTGTTCGTCACCAAAAAATTTGACTCAAATCATACAGATCTTGCCTCAATGTGTGAATGGATCTATACAACTCTTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACCCGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //