Array 1 3217-3005 **** Predicted by CRISPRDetect 2.4 *** >NZ_PICY01000030.1 Klebsiella pneumoniae strain C26 NODE_30_length_31805_cov_3.54543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3216 28 100.0 33 ............................ CAGACATTGAGCCAGTCAGAACGCCAGTTAAGG 3155 28 100.0 33 ............................ TCGGATCGGACGGGTCGCGCATATCATTACAAA 3094 28 100.0 34 ............................ CACACAAAAATGTTACTCGTGACCGTTTTGTTCG 3032 28 89.3 0 ...............A...A.......T | ========== ====== ====== ====== ============================ ================================== ================== 4 28 97.3 34 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGTGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCGGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTCCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15589-14096 **** Predicted by CRISPRDetect 2.4 *** >NZ_PICY01000070.1 Klebsiella pneumoniae strain C26 NODE_70_length_21354_cov_3.65351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15588 28 100.0 33 ............................ TTGCCTGTTTCCTTGTATGTGGTGACGTCGCAG 15527 28 100.0 33 ............................ TCAAAGATTGCCATTCCATCCTTGATTCTCATG 15466 28 100.0 33 ............................ CGATCCCATTCTGACCATCTGCACCAGGATTCA 15405 28 100.0 33 ............................ TGAGCTATCCGGCCAGTGCGTCGCTGTAAATGG 15344 28 100.0 33 ............................ TTAAACGGGCGTTAAAATGCTATGTAGGACGGC 15283 28 100.0 33 ............................ TAGCGATTTTGTTAACGTCGTACGTGTGACCGG 15222 28 100.0 33 ............................ TCTGTCGGAAACGCTTCCCGGTACATGGGGAAG 15161 28 100.0 33 ............................ CAGAAAGTCTTTCCGCCATCTCGGTGACGAAGT 15100 28 100.0 33 ............................ TAACCGAAGATGGCGAAGCGATTGAAGGCGAGG 15039 28 100.0 33 ............................ CAGCAAACCATCTGCATAAGCAGGTGTCACGAT 14978 28 100.0 33 ............................ CAATGCTCCCCGCCGTGTTCAGCGGGTCGAGAA 14917 28 100.0 33 ............................ TATAACCAGATTCAATCTCATCATCACTCAAAA 14856 28 100.0 33 ............................ TTTTTGATATCAGGAGGAAGCATGTTCCACGCA 14795 28 100.0 33 ............................ TGAGCCAGATTGAAGTGTTATCGGTGCCAGTAC 14734 28 100.0 33 ............................ TACGCCAAGTCTGGCGGCCGCATGTGGGCTCAC 14673 28 100.0 33 ............................ TATAACAGGGATTGGAGATAGCTTAACTGCTGG 14612 28 100.0 33 ............................ CTGAATATCTGCGCAACGGCCAGCATTGCGACC 14551 28 100.0 33 ............................ TATAGAAGGGGATATCTACACAAGGCAGGTTGG 14490 28 100.0 33 ............................ TATTCCCTGATGATTTATCAGTACGTCGCAGAC 14429 28 96.4 33 A........................... TTGATATAACAGGTCTTGAGGAAAAGGTTAATC 14368 28 100.0 34 ............................ TATGGGACTTGCCGCCAACTCCTTTTGATATTCG 14306 28 100.0 33 ............................ TGGTTTATTGGCGCTAGTGAAGATGAGGTGTTG 14245 28 100.0 33 ............................ TGGTTTTCTTGACCTGGCGGCGGTAAACGCTGT 14184 28 100.0 33 ............................ TATCTCACCAGCCTTGATAACGTGCAGGCGCGC 14123 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGAATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGTCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //