Array 1 1131136-1134529 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFSV01000001.1 Fannyhessea vaginae strain NCTC13935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1131136 28 100.0 34 ............................ TCAGGATTATGTGATATTTCCTGCGCTAATTCTA 1131198 28 100.0 33 ............................ CTAAAAAGCTTGGTTACGATGACGCAGAAGAGA 1131259 28 100.0 34 ............................ TTGAAAAACAGTTAAAAGAAGATGATAGTGATGA 1131321 28 100.0 33 ............................ CGAGATAATGCAATTTTGGGAACACTTTTTAGA 1131382 28 100.0 33 ............................ CTTGCCTTCCCCGTACAAAGAGTCCATCTCATT 1131443 28 100.0 33 ............................ TAATGAAAAATCTCTTTATAGAGTATGCAAAGA 1131504 28 100.0 33 ............................ TAATATATGAGCATACACTCCCGATAAGTGGTA 1131565 28 100.0 33 ............................ CGCACCAGCCTCTTTCGCGGCTGCCGTTGTAAC 1131626 28 100.0 33 ............................ CAAAAGAGCCTGCAACAATTGCAAGCCCTGACG 1131687 28 100.0 33 ............................ TACAGCTCCTCAAGACAATTTGCAGCATAATGC 1131748 28 100.0 33 ............................ TTGAAAAATATCAGTTCGCTCTTAAAAAAATCC 1131809 28 100.0 33 ............................ CAAGGTTATCGCAAACTACGATAGAGGCTGGGA 1131870 28 100.0 33 ............................ CACGAACGGACACTATTGTGCGCGACAAGATAC 1131931 28 100.0 33 ............................ TAAGTGGTATTCCCCACTGTATAAACGCGCTTA 1131992 28 100.0 33 ............................ CCCATTTAGCGTCAAACCGAGCGCCATGTTTAA 1132053 28 100.0 33 ............................ TTGCACCCAACACAGCTACAGCTACAGTGCCAA 1132114 28 100.0 33 ............................ CTAAAAAGCTTGGTTACGATGACGCAGAAGAGA 1132175 28 100.0 34 ............................ TTGAAAAACAGTTAAAAGAAGATGATAGTGATGA 1132237 28 100.0 33 ............................ CGAGATAATGCAATTTTGGGAACACTTTTTAGA 1132298 28 100.0 33 ............................ CTTGCCTTCCCCGTACAAAGAGTCCATCTCATT 1132359 28 100.0 33 ............................ TAATGAAAAATCTCTTTATAGAGTATGCAAAGA 1132420 28 100.0 33 ............................ TAATATATGAGCATACACTCCCGATAAGTGGTA 1132481 28 100.0 33 ............................ CGCACCAGCCTCTTTCGCGGCTGCCGTTGTAAC 1132542 28 100.0 33 ............................ CAAAAGAGCCTGCAACAATTGCAAGCCCTGACG 1132603 28 100.0 33 ............................ TACAGCTCCTCAAGACAATTTGCAGCATAATGC 1132664 28 100.0 33 ............................ TTGAAAAATATCAGTTCGCTCTTAAAAAAATCC 1132725 28 100.0 33 ............................ CAAGGTTATCGCAAACTACGATAGAGGCTGGGA 1132786 28 100.0 33 ............................ CACGAACGGACACTATTGTGCGCGACAAGATAC 1132847 28 100.0 33 ............................ TAAGTGGTATTCCCCACTGTATAAACGCGCTTA 1132908 28 100.0 33 ............................ CCCATTTAGCGTCAAACCGAGCGCCATGTTTAA 1132969 28 100.0 33 ............................ TTGCACCCAACACAGCTACAGCTACAGTGCCAA 1133030 28 100.0 33 ............................ CTAAAAAGCTTGGTTACGATGACGCAGAAGAGA 1133091 28 100.0 34 ............................ TTGAAAAACAGTTAAAAGAAGATGATAGTGATGA 1133153 28 100.0 33 ............................ CGAGATAATGCAATTTTGGGAACACTTTTTAGA 1133214 28 100.0 33 ............................ CTTGCCTTCCCCGTACAAAGAGTCCATCTCATT 1133275 28 100.0 33 ............................ TAATGAAAAATCTCTTTATAGAGTATGCAAAGA 1133336 28 100.0 34 ............................ TTGGGCGCGTGGTGAGATAGGCTATTCTCGTTGG 1133398 28 100.0 34 ............................ CACCAAAATTTGATAACCTCGGAGCCAATGTAAA 1133460 28 100.0 33 ............................ TAATATACACCTTGATAATCCTGTACATGCTCT 1133521 28 100.0 33 ............................ CACAAAAAAAGGAGACATCTGCCGCGCTTTCGA 1133582 28 100.0 33 ............................ CGCCTTTAGGTAGGCTTTCAGTCAAAGTCACAG 1133643 28 100.0 33 ............................ TAAGCTTGCAAAAAATACCCTCAGACAAAAGAG 1133704 28 100.0 33 ............................ TAAGCTTGCAAAAAATACCCTCAGACAAAAGAG 1133765 28 100.0 33 ............................ CGGAGCGTCCCATTTGCCTTGTAGCTCATGTGC 1133826 28 100.0 34 ............................ TTATATACCGCAACGTTTCGATTGTACACTAAAG 1133888 28 96.4 33 ............C............... CGTATTATATAAGATATACGCAACAATTAATAA 1133949 28 96.4 34 ............C............... CAAGCAAAATACTACCTTGACACCGTAAACGATG 1134011 28 96.4 33 ............C............... TATTTCTGTCTACGCTGTTGTTTTCGTTCCACT 1134072 28 100.0 33 ............................ CGAAAGCATGACGGTCGCAACGTTCGCACGTAT 1134133 28 96.4 33 .....A...................... CGGCGTTGGCACGCAATTGTACAAGGAGATATT 1134194 28 96.4 34 ..A......................... CGCTGGTATAGATGTAACAAAGGTTTCAAAGCTG 1134256 28 96.4 34 ..A......................... TAAGTTCATCTGCGTCTTGTGCGCTAATAGGTGA 1134318 28 96.4 34 ..A......................... TCGTGGAAAGCAGCGTGTAGGACGTGGGATATTC 1134380 28 96.4 33 ..A......................... TTGGGCACGTGGCGAGATTGGATATTCACGTTG 1134441 28 96.4 33 ..A......................... TGGTCATTCTGTCATTGAATTTGAGGTAAAAAG 1134502 28 82.1 0 ..A...................G.G.GA | ========== ====== ====== ====== ============================ ================================== ================== 56 28 99.1 33 GTTTTTCCCGCATACGCGGGGGTGATCC # Left flank : AACAGACGACAAAATCATAGAAATAGGCGCAATTAGAATTTGCGACAAGCAGGTAGATGACTATCAGTGTTTAATTAAACGGGATTCATTGAATCTTTCCCCAGCTATAACCCAACTAACTGGGCTTACCGATATAGAGCTCGCCAATCGGGGAGTAAATCCTAACTTGGCTCTTAATGGGTTGAAACAGTTTATAGGACATTTGCCTGTTCTAGGTTATAACATTGCGTTTGATATGCGATTTATAAATAATGAGCTACGCTCTATGAACGAAGAGCTTCTTGATAACAGAGAAATTGATGTAATGAGATTTATTAAGAAAGAAAAGATGTTCTTAGAGAGTTATGCGCTTGATAATGTTCTTAAAGTGTATGGAATATCAGCTACTGTTCCGCACCGGGCGCTTGGAGATGCTAAACTGATAGCAAAGCTTGCATTAAAAGTGAATAAAATTCTTGATGTTCTCTAGTTAAAGCAGCTTTAAACAGGGATTTTTAAGA # Right flank : ACCCCATCAACCTTGAGGTACATGGCGGTGTAAACGTGATTTTTACGATTGGTGGATTCGTCAAGTGTAAAGTTGAACAAGCGCATCTCTACTGGTTTGTTATGACACTTGCAACGTATGTTGTTAGTGTGTCACCTTAAAGAAAGAGCTTGAGGCGGACGCACGTGCGCTCATACCACGCCTAAACGCTAAAGGAGAAATATTACTGAAGACGACGTAACGAACGTGTAGAAGCGTTTACAAAGAGCTGTATTACGCATTCGATTAACTAATTGGTTGGATAACGGTAACTACACAGGGAGTAACCACTAAAATAATCTTGTTGAAAAATGTTGCAAGGATAATTCGAACGGTAAAAAATTGATTGTGAACGTGAAACCGAAATATTACGTCATACCGTTTTAAAACGGTGGAATTCTTATTTATATGTTATATTGTATAAAACACTTTACGCTGTAAAGTAAATGCTATAAATAGAATGTTAAAAGAGGTAATTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //