Array 1 134425-134059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000006.1 Listeria seeligeri strain FSL L7-0185 NODE_6_length_159148_cov_121.306876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134424 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA C [134395] 134357 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 134291 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 134225 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 134159 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 134093 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAATTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TCCTACTTAATAATAGTAATTAAAACAACCAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGATAAAGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 138131-137765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000006.1 Listeria seeligeri strain FSL L7-0185 NODE_6_length_159148_cov_121.306876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138130 36 100.0 30 .................................... TTTGGCGTAGTGAGTTATATCGAGGCGCAG 138064 36 100.0 30 .................................... CAGAAAAATAATTGATAGCTGGATATGGCA 137998 36 100.0 30 .................................... GATAGCTTCCATGCAATCGGCGGGGACTGT 137932 36 100.0 30 .................................... AATTATTCCGCAATTTGTGGCTGATGCAAT 137866 36 100.0 30 .................................... AATATTGATATAGTCTCTGCTGATACAATG 137800 36 83.3 0 ...........................A..AA.GTG | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : AGCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACACCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTGATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATTCTTCTATTAACGTCCTTTGCGAACGTCATTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : CTTTAAAAGAATTACTTCATCGTTAATAGCGTTCTTACTAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGTTGGAGTTTATCAATTTTTAAATGATGATTGGTTTGATATAGTGGTTTAAATGTCACTTCCATTCCATGAGAGCTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTACGATCATAAGAAAGTACATCTCGAGCATCGTCAAATAATTCTAAAATAGAGTTCCCTAACTGTCCGTTAAGGTAATTAAAATGTGAAATTTTATTTCGGTTTTTTTTCAATGGCCAAACAAACATTTCCAAGTGATTTAAGGTTGAAAGTAATAGCTGAAGATTATTTTGTAGTTGTTCATTTTCTTTTACGACTACACATTCTGGTTCAGAGGTATCTTTAATATTATATAACTCATGACGTTTATAGTTTTTATTCCTAAACCCTAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 461619-462776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000003.1 Listeria seeligeri strain FSL L7-0185 NODE_3_length_468176_cov_126.953305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 461619 36 100.0 30 .................................... TGTCGTAGGAAATTATATCCAATAGTTTCA 461685 36 100.0 30 .................................... AATACGTAACAAACATGGTATTGTTACTCA 461751 36 100.0 30 .................................... ATATTTTCGCATGAAAAGTTAAACTTGCAT 461817 36 100.0 30 .................................... CTCACGTTGTAACTCCTTTAATTCCCACAA 461883 36 100.0 30 .................................... TCCGAAATTAATTGGTTATGAAACAGTGAT 461949 36 100.0 30 .................................... AAATCAGGCGATGATTAAATCTCAGTATCC 462015 36 100.0 30 .................................... TTGCACACATCATGATGTGCGGAAGTATAA 462081 36 100.0 30 .................................... TGACGATACTTTCAACATCTGTTTGCGCCT 462147 36 100.0 30 .................................... ACTTAGTAATTTTTGAACATCGGAATTATT 462213 36 100.0 30 .................................... AAGTTTTCTGGTCTAATTTCCCGTACTTCT 462279 36 100.0 30 .................................... AGCGGGTGCTGCGTTGCCACTAGTGAGCGA 462345 36 100.0 30 .................................... CCCAGCTACTGGGAACTCCTGTAAGACCTA 462411 36 100.0 30 .................................... TTGTTTTTGACATAAAAAATAAGCCTTATT 462477 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 462543 36 100.0 30 .................................... ATATATTTCGAGCGCTTTTTTAACATCACG 462609 36 100.0 30 .................................... CTATTCAAGAAGAATTGTTGCCGGCAACAT 462675 36 100.0 30 .................................... AGTTGGAAGAAAAGCGAATTATGGGCTATA 462741 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCAAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTGAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38410-38953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000004.1 Listeria seeligeri strain FSL L7-0185 NODE_4_length_227577_cov_107.804470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 38410 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 38476 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 38539 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 38603 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 38667 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 38733 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 38796 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 38860 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 38925 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 45175-46689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000004.1 Listeria seeligeri strain FSL L7-0185 NODE_4_length_227577_cov_107.804470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 45175 29 100.0 37 ............................. TTCTTCTTCCTCTCCTTCCTTTAGATACTCTCCCTCT 45241 29 100.0 35 ............................. ATCGCTTTTAATCCCGGTTGAATAACATCCCAATC 45305 29 100.0 36 ............................. ATTAAAGTCCGGTCGACCTCTTTACTCTCAGCAATC 45370 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTTCTTTCACTTTTAA 45434 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 45499 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 45563 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 45626 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 45690 29 100.0 36 ............................. CCCTTTGTTTTCGCCATTCCGGCGATAGTAAACACC 45755 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 45819 29 100.0 36 ............................. TTCTCTTGCTGTAACTGATGAATCTCATCTGTAAGT 45884 29 100.0 37 ............................. TATTTATAACGCCAATTACCTGTTTCAGTCGCTACAG 45950 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 46015 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 46080 29 100.0 35 ............................. AAACGACGCGCTGTATTATTAGCTTCTTTGAAATT 46144 29 100.0 35 ............................. GTTAAAATATGCTCTGATTGTTTTATGACTGTTTT 46208 29 100.0 36 ............................. ATTATTATTTATTTTCGCTTGAAATAGCGTAGGGAA 46273 29 100.0 36 ............................. AAAACAAGCGTAGAAAATAAAGATGAATATTTTCTT 46338 29 96.6 34 ................T............ GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 46401 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 46465 29 100.0 36 ............................. ACTCACGTTTGATTTCTATCTTCACAAAAGCTTTGC 46530 29 100.0 36 ............................. TAGATACATCTACAACACGCAAAAGCGTCCCAACAG 46595 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 46660 29 86.2 0 ........C....C..A...........G | T [46686] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 55304-56685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYT010000004.1 Listeria seeligeri strain FSL L7-0185 NODE_4_length_227577_cov_107.804470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55304 29 100.0 36 ............................. AACTGATAGAAGTCATCAGTTGTTTGCGGATATAAT 55369 29 100.0 37 ............................. ATGGAAATTATCCACAAAAAATGGGGAACTGGCTTTT 55435 29 100.0 35 ............................. ATTTCACTAAATTTCCCGGCGAAGTATACACCGTA 55499 29 100.0 36 ............................. TTCGTTAAGAGGATCTTGTGCCTTCGTCAGATTCCT 55564 29 100.0 35 ............................. ACAGGTATCGGCTCAACAGTTTTAGAGAGCATCAC 55628 29 100.0 35 ............................. CTATCAGTTTCTTCCTCCATTGTTGTTCCATCTTC 55692 29 100.0 34 ............................. ATTTCAAAGTTCATTTAATTTCCTCCTCTAAATC 55755 29 100.0 34 ............................. ATATGATTAGAGAAAGAAAAATAGAACCATTTTA 55818 29 100.0 34 ............................. AAATATTTAGTTTCTTGGCTGATCATGCTTTGAC 55881 29 100.0 36 ............................. TGAAAATTAAAATAAACGGAGATTACGTAATCAGAG 55946 29 100.0 35 ............................. AAGACCGGAAAAGTTTCTAGCAATGCGCCGGAAGT 56010 29 100.0 36 ............................. CTTTATCCGTTCCGGCTAAAGTAGGCGATATTTTGC 56075 29 100.0 35 ............................. GTTACTAATGACCATCCGGCCGAACCAGTTAATGC 56139 29 100.0 38 ............................. TTCGGTCTAGTTCTAGCTTTTCTACCCAGTTTGGATTT 56206 29 100.0 35 ............................. TATCAAACTCAGTTGCTGGCACTAAATTATAGACC 56270 29 100.0 34 ............................. ACATGTCGTTTTTAAAATTACGAAAAGCGGATTT 56333 29 100.0 36 ............................. GAAAATAAGAAATGAGGTCGAAACATGCCGAATACA 56398 29 100.0 36 ............................. AACCATCTGGTAGATCAGTGGGGAATGGAATTTTGT 56463 29 100.0 36 ............................. AAATATCATTTGACTGATGAAGAAATTCATGAAGTA 56528 29 96.6 34 .........................G... TGTGGTAGATAGCATCGCCAAGGGAGGTAAGTCG 56591 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 56657 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTAGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //