Array 1 19200-21003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGH01000042.1 Kitasatospora sp. NRRL B-11411 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19200 37 100.0 35 ..................................... TTGAACAGCGTCCAGACGATGCCCTGCGGGTCGTG 19272 37 100.0 38 ..................................... AGGATCATTCAGCGGGTCGATGGCCGGCCGTGGCTGCA 19347 37 100.0 36 ..................................... AGCGCCGCCTTCCTGCTCCACGACCGCCCCGGCGTG 19420 37 100.0 36 ..................................... TCGGACCGGAGCGCGGTGAGCCACGGCCCATCGGCG 19493 37 100.0 37 ..................................... ACGGCCTGGTCGTAGCTGTCGGCCCGCTGCCGGCCGT 19567 37 100.0 37 ..................................... GGCTGCTCGGCCTCGGCCGCGGCCGGCGCTGCGGGGC 19641 37 100.0 37 ..................................... ACCGTCGACACCGAGTGGGTCGGAGCCGGCCAGTCCC 19715 37 100.0 36 ..................................... CGTATCTACACGGTCAATTCGACCGCCAACCGCACG 19788 37 100.0 36 ..................................... ACCCCCAGCCGGCGCGACCGCGACCGCGAGCACCGC 19861 37 100.0 34 ..................................... CACGTGACTCGGCCCGGATCGGACACGGTCTCTG 19932 37 100.0 37 ..................................... TACTGGCTGCCCGAGGGCGTCTCGGTGCAGCCGCCGG 20006 37 97.3 36 .................A................... CCCTACTCGAAGACCGACCAGGCCGCGAAGGGCGAG 20079 37 100.0 36 ..................................... TCCTCGTCCGGGATCGTGACGTCGAACGGCACGACC 20152 37 97.3 35 ...............A..................... TCTTCCACCGTCGGCCGCGGAGTGTGGGCAGCCGG 20224 37 100.0 38 ..................................... CATCCCCTTGCGGGGACGCTGGGCACTACCCAACACGC 20299 37 97.3 38 ..........C.......................... CTGAACGAGCTGGCCGCCCGGTGAGCCGCAGCACCCAG 20374 37 100.0 38 ..................................... GCGGTGAACAGTACGGAGCCGATACCGTCCGCGTGGAG 20449 37 100.0 38 ..................................... AAGACCCGCGAGGCCGAGTTCGGCCCGGGGATGCTCAA 20524 37 100.0 37 ..................................... ACGTCGGTGGGTGATGGCTGCGGGTCGGTGGTGCAGC 20598 37 97.3 36 ..........C.......................... AGCATGGGACGAGTCAAGCCCGGCCGAGGACGGCGC 20671 37 100.0 36 ..................................... GCCGAAACGATCACCTTCAACGGCGACGGCGCGGTC 20744 37 94.6 37 ......................A.............G GGGCCGACCACTCCGTCCATCTCCAGGCCGGTGCAGG 20818 37 100.0 37 ..................................... ATCGAGGGCCTCAACTCAGCCATGGACCTGTCGGCCG 20892 37 91.9 38 ..........C...C....G................. GACAAGAAGGTATCGGGGGCGTGGCTGGTGGATCTCTC 20967 37 75.7 0 ..........C..C.....GT.......AG..CT.G. | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 98.1 37 GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : TGCACGACGGCGCCGAACGGAACCCCGGCGTGCGAGGCGGCCAGCCACGCGCCGGCCTCCTTGTGGGGGACACCGACCCCGCGCTTGTGCCGCTCCGCCCCGTCCAGACCGTGCTGCCAGGCGCAGGAGCCCTTCCCGACGTCGTGGACCAGCGCCAGGTACTCGGCCAACTCACCTGCCCCAAAGGCCGATCCGAACCGGCGGGCCAGAGCAGCGGATCCCCGGAGATGATCCTCCAGAGTGTGGCGGGCACCTGATACGTTTCGGCTGTGGGCCCACAACGGCACCACCGCGCTGCTTGAACCCTCCATAGCGACTGCTGTGTTCACAGCCGGACCGTAGCGCCGCGGGCTGACATCTGGGGCCGACGGTTCGGAACCCCAAGCATGCAGCCGACATGCGGATCGCACCGAAGCAGAATGCCCGAACTCTGCTGATTTGTCTGCTCCGTATGGTGTATAGGAACGCAGTCCATCAGCGGAAACCGCTGATGGACTGGC # Right flank : CTCCGATGCCGAGGTTCAGGCACCGCAGGAGGCCCGATGGTGAGCAGTCAGATGATCTCCGTTGATAAATAAACTATCCGATCAATATCGATCAAGAAATGACTGAAATGAGTCGTGTTCTTGTTTTGATCTGTCTCGTTCTTTCTTTTCTCGTGCTTCCTTCGTCGTTGTTGCTTGCAATTGATCGAACCCTTTCGGTGGTTGAGTTGCTAGGTGATTCCGCAGCTTGTCCTGGTGTCGGTGGCCGGGTTTATGGTCTCTGCGATGTATGCAGCCGGGTCGGCTTCATGTCCATTGCGTGAAAGGGTAGTTGTGGTGACTGGAAGGGTTGAGATGGCGGGGGAGCGGGATGCTCTGGCCCGCCGCCGGGGGAACGGGAGGTGGGTGTTCCCGGATCTGGTGGCGGAGGTGTGGGGGCCTCTTGCGTGTTTCACCAGACCGGAGTTGAAGGCGGAGCGGGTGAGTTATCCGGTGATGACACCCTCGGCCGCGGTGGGGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 26968-28680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGH01000042.1 Kitasatospora sp. NRRL B-11411 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26968 37 100.0 36 ..................................... GTGGTCTTCGGCTGGCTCTTGATGTGCTGCGCGCCG 27041 37 100.0 36 ..................................... TCGCTCAGGCCCTGGTCGACGGGCACGACGGTCGTC 27114 37 100.0 36 ..................................... TCGGACGCCCGGCGCTCCAGCGCGGTGACCATGCGG 27187 37 100.0 37 ..................................... GCCTCCGTCGCCGAGCCGTCCGCCGTCCGGGCCCCGC 27261 37 100.0 36 ..................................... AGGCTCTCCTTGAATTCGGTGATCCACGCGTCGTCG 27334 37 100.0 36 ..................................... TGCCGGTCCAGCTCGTCGATCACCTTGAGCGGGATG 27407 37 100.0 36 ..................................... TTGATGTCCGAAAGGGCGAAGGACCTCCAACCACCA 27480 37 100.0 35 ..................................... CACTGGCGAGGCCCGCTGCTTCACGCGGCCCCGAC 27552 37 100.0 35 ..................................... CTCGACGCCACCAGCCGCGTCCCCCTCGCCTCCTA 27624 37 97.3 35 .................................A... ACCAGACCGTCGCTGAGGGCGTCGCCCATGGTCAG 27696 37 100.0 36 ..................................... CCCACCACAGGCACCGGGCGGAGGGGCCGGATCGGC 27769 37 100.0 36 ..................................... CCAGCCGGTGCGGGTGAGCAGGGTGTCGATGTCGAT 27842 37 100.0 37 ..................................... CTGAACAAGCGTCAGCCGTAGACTGACGGCACGACGG 27916 37 100.0 37 ..................................... ACGGCCGCTGGGCCGCGGGCGTGATCGGCACCGCGCT 27990 37 100.0 35 ..................................... CACCTGCGCCCGGTGCCGCCCGTTGATCGCCTCGA 28062 37 100.0 35 ..................................... CCGAGCTCCGCGATGACCGTCCGACCCTCCTCCGA 28134 37 100.0 36 ..................................... CTGTTGATGACGAGCGGCTGGCCGTTGCCGTCCGTG 28207 37 100.0 37 ..................................... AGGAATCTCCGATCGTGAGGGCCGGTCAGGCGACGGC 28281 37 100.0 36 ..................................... TGTTCTCCATGGGTGGTGCGGTGCCCCGGAGTTGGG 28354 37 100.0 36 ..................................... CGCAAGTCCAGCCACAGCAACGGGGACGGAAACTGC 28427 37 100.0 37 ..................................... GCGTCGATCTCCGACCAGTTGTCCAGCAGTTCCTGCG 28501 37 97.3 36 .......................T............. TACGACACGCTCGTCGGCCGGACGATCACCGACGAG 28574 37 100.0 33 ..................................... GCGTTCTGGGCCGCAGGCAAGGCGCTCTAAGTG 28644 37 89.2 0 .................A...........GCT..... | ========== ====== ====== ====== ===================================== ===================================== ================== 24 37 99.3 36 GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : TGCAGTGCCGCATCCTCGCCCGCCACATTCGAGGAGACCTCCCCGGCTACCTCCCCTGGACGGCCAGCTGATGGACCTCCTGCTCACCTACGACGTCGATACCACCACCCCTGAAGGCCGCCGCCGACTCCGGAAAGTCGCCAAACTCTGCGAAGGCCACGGCCTACGAGTCCAGAAGTCCGTTTTCGAGATCGTCGCCACCGACATCGACCTCCTCCACCTCCTGGACGACATCGGCAAGACGATCGACACAGACATCGACAGCATCCGGATCTACCGGCTCCCCCACAACGGCTTCAACGACGTACGGACACTGGGCACCGCCCGGATCCAACCCCACCGCGAGGACCTGGTCCTGTGACAGCCTTGGGTTCGGAACCCCAAGCACACACGCAACACGCAGATCGCACCGAATCGTGATGCCCGAATTGAGTGGAATCAACCGGTGAACAAGACCTGGATTGCCCTCGCTCACGAAGGGTTCCCCCTGGTCGTTCGCT # Right flank : CCGGGGACGGGCTGTCGGCCTGGTTTTATTGCGCGAGTCGAAGCTGACGTCCCGTTGTATCAGGTCAGCATGAGTTTGAGTGCGGCCTGCTCCACACACCCGTACCTGGGAATCCAAGTCTCTTGAGCCACAGCAGCGCTAGCCGCGCAACGAGGTCGGTTGACCCACGCGGGCGGTCGAACCGATCTTTCGGAGAATATGACCTGGACAGCTGTTTGTTCAGGTCATGGTGGTGGTGGACGGCAGTCGGTGGCGTGGCCAGGGGCGTCTGGGCACGCGGTCCGCCGTCCTGGGTCCCTTCACTCGTCCTACGTGCCCAGGTACGCTCTCGACACCGGATGGGCGGACGTAGAAGCCGAGGTTCTCCGGCAGCTCCACCTCGTCCACCCAGTCGGGCAGCGGCGGCAGCGCCGTCCCCTGCCCCAGCAGCACCGTCCGCACCCCGTGCTGCGCCCCGTCCTGGGCGGCCACCGAGGCGAGCAGCGCGGTGAGTTCGGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //