Array 1 523606-524695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018791.1 Campylobacter sp. RM8964 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 523606 36 100.0 30 .................................... CAAAGCTGAAGGTGGTAAAAATGTAATTTA 523672 36 100.0 30 .................................... TCATCGCTAGGGCTAAAGTCGTAAGAATTA 523738 36 100.0 30 .................................... TTATAACCGCTATAATCTAAACTAACATTA 523804 36 100.0 30 .................................... AAAATAGCCGATACTTTGCCATTTAGATTT 523870 36 100.0 30 .................................... ACTTAAAGCATATTTAATCGCCTTTGCTAG 523936 36 100.0 30 .................................... TATCTGCTGTCCATATATTTTTAATTTCAA 524002 36 100.0 29 .................................... CTTTTTTATACTCATTAATCCAATCTATA 524067 36 100.0 29 .................................... CTGAAATATCGCGCAAATATAACATCAAT 524132 36 100.0 30 .................................... AGCTTATCTAATCCACTTAAAGGCGTGATT 524198 36 100.0 30 .................................... ATTAAACTTATACCCTTTACAAACAGCTGG 524264 36 100.0 30 .................................... GCCATATAAGCCTCGGTTATTGATAACTCT 524330 36 100.0 30 .................................... AACTTATACCGAGTAGTTCGCAAAGAGGGA 524396 36 100.0 30 .................................... AACTTATACCGAGTAGTTCGCAAAGAGGGA 524462 36 100.0 30 .................................... GCTAGTCGCTTTGTCTTGTATCTTGAGAGT 524528 36 100.0 30 .................................... TACCTATACCGATAAAGACGGAAATGTTCA 524594 36 100.0 30 .................................... AACATATAATAATAAAAATGCTATAATTCA 524660 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : GCGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATACGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAGCTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTGAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAGATCAAAATACCATAAAATCATATCTATAAGAAGTTTC # Right flank : CACATTTGCAAGTATTATGTTATCAAAGGGGATTATAACATATATAAACTAAGGTTTTTTATGATTAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAACGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACTGATTTTGGAGTAGGGGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGTTGGTGTGAGACTGACTAAAAATGGTTCTTTAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1405926-1405671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018791.1 Campylobacter sp. RM8964 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1405925 37 97.3 32 A.................................... CAGCAGACAAAAACAAATCAAAAATTAAATTA 1405856 37 100.0 37 ..................................... TTTATTATTAAATGTTACTTGACCAGTGTTAAATGTG T [1405831] 1405781 37 97.3 37 .....T............................... TTTGTATTTTGGCATTTTATAATCAGTGTATTCGTGA 1405707 37 94.6 0 .....T...........................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 97.3 36 TATTACAAACAATATGACCCGATTTAGGGGATTGAAA # Left flank : TATCTTTAACTAGCTAATCTATTTTGATAATAAATTTAATATAATAGTAGATTATATTTAAATTTGATTAGATGTTTAGATTTGTTTTCAAGCTGAGTTTGTTTGTGGTATAATTTGCAACTTGTCAAGGCTTATTAAGTCTTACTCCACGAAAGTATTATAAACAATATGACCCGATTTAGGGGATTGAAACTTAATATTTTATTATTATTATTTAACTATAATACAAAAATATCTTAAAAGGAGAAAAAATGACATATCCAGAAGTGCATAGTCTAGAAGAAAGTTTAGCAATACTTAAAAAATATAAAGATGATGTAAGCAAAAAAGACTATGAAGAAATTAAATCTACCATTTGCGGACACGCTATCGAAGATATTTTTGCAAATGAAGAAGATATTATTATGCTAGTAAAAATGAGCGCATATAATCTAAGTAGTGATGAGATACTAGCAGAATACAAAGAAAAGGGATTTGTAGAATATGAAAGAAAGCAATGA # Right flank : CTCATATTAATCACTATGCTATATAATAATAAAGGAGTAAATTATGATATTTATATTCAAATTACTATTTTTTTATTGTTACTAGCAGCTATTTTAAATAAAATTTTTATGATAGATATAGATTTAGCACAATATATAGCTATATGCTTGATGGTTTTTTATTACTTTTTTTATTATCTTTTTTGCTATTTATACCAAAAAGAGTTAAAAAGAGCCAAGCAAGATGAGATAAAAAAAGCATATGATTACTCAAAAATAGTAATCTAATTGCTATTTATCCTTAGTGCTATCTCACAAATAATATAAGCCAATTTAAAAGATTAAATGTTCTAAGAAGTTATATTAGTTTATTAATACGATAAGTATTAGAGCCTTATTTGGCTCTAAGGTTATTTAGCATCCCAGGCTAAGACTGTATTGCCAAAAGCATCACTTAAAACATCACCCATACCCATGATATTATACCCAGCATCTACATAATGCACTTCACCAGTTACACC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTACAAACAATATGACCCGATTTAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //