Array 1 4270166-4266980 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSI01000001.1 Paenibacillus macerans strain NCTC6355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4270165 32 100.0 33 ................................ ATCGTCTCCCTTATTTGTCGTATGTACGACTTG 4270100 32 100.0 34 ................................ AGCCCGGCAACCGATGGAGGCTATTTGGCGACAG 4270034 32 100.0 35 ................................ GGTTAATCCGGAAGCAATATCACAACTGGAACGAA 4269967 32 100.0 35 ................................ GCGTCAGCATACAGCAGTTCGGACGCGCGGTCCCA 4269900 32 100.0 36 ................................ GAGAATGGGCGCGTTCCGTTCGAAGTCCCACTCGTC 4269832 32 100.0 35 ................................ TTGCGCGGCAATAGGGGAGGCGTATGACAATGAGT 4269765 32 100.0 36 ................................ CGACATATGGCATTATTTGATGGGGCAAGGATTTGC 4269697 32 100.0 34 ................................ CCGTAATGCCGGTTCAAATAGCACATAAACCTCG 4269631 32 100.0 37 ................................ CAAGTAGCCTATCGCCTGCATCTGTGCAGGCGTAAGC 4269562 32 100.0 35 ................................ GGGGCATTTCGATCCCATCCCCTTACCAACCATAA 4269495 32 100.0 34 ................................ AGATCATCGACGACATAGGCGGTGAGTATGATGG 4269429 32 100.0 38 ................................ GGAGCAGTTGCGGCGTCAGGTGGTCCATCTGCTCAAAA 4269359 32 100.0 36 ................................ GGATACTTCGGATAAAGGGTACACCTATACACCCGG 4269291 32 100.0 35 ................................ TGGAGAATGAACTGTCAGCTCCAGTTTTGCCTGAT 4269224 32 100.0 35 ................................ GAAACCGAGTGTACCGGGTAATTTCGGAGTCGTAG 4269157 32 100.0 37 ................................ AGGAAGGACTAAATCCTGCGGGTGTTTAAGGAGACAA 4269088 32 100.0 34 ................................ TTTGACTGTGGTGATAGCTACTCCAGTGTTTACA 4269022 32 100.0 34 ................................ ACGCGGTTTGCAGAAATAGCGATCTTCCCAGTCG 4268956 32 100.0 34 ................................ TCCAAACTCATGAACGGCTTGCTGTGGCTTCTCC 4268890 32 100.0 34 ................................ GCAAACGTCATTGTCCCCTTTTTGCAGTTCTTCG 4268824 32 100.0 35 ................................ CAAGCAACACTCATTAAGTTTCTCATTCCGATCAT 4268757 32 100.0 35 ................................ ATCAAACGGGCGTCTATGGGAAAAGAAATCAAAAT 4268690 32 100.0 35 ................................ GATTTGATTTCGAGACCAACGCGAATCGTCCGGCC 4268623 32 100.0 34 ................................ CCGACTTAAAAATATACCCTGTGTTCTCGATCAT 4268557 32 100.0 37 ................................ CGAAGTCCGCCGGCGGAAGCTGCGCGAATTTCTCCGC 4268488 32 100.0 34 ................................ CCGGAACCGCCCCACCAGTCACTGATTGTCTTTT 4268422 32 100.0 37 ................................ AGCTGATTCCGTCCGGGATGAAGTTCCCGAACCGAAG 4268353 32 100.0 36 ................................ TCTGAAATACTTGTTATCGCAATAATATCTGGTATA 4268285 32 100.0 35 ................................ TTAATAGGAGGACTTATGTATGAATCTCGTACCGA 4268218 32 100.0 33 ................................ AAGCAGCCTTAGAAATGCTGCATCCGACCGGGA 4268153 32 100.0 35 ................................ CGTAATTGAATCCGTTTATGATCAGCCGATTGTTC 4268086 32 100.0 35 ................................ CTAATTGGGAGAAACACCAAAATACTGAGGCTCTT 4268019 32 100.0 34 ................................ TAATAGTTTCACGCGCTCCCCTCCCTTTACTTCT 4267953 32 100.0 33 ................................ GCTTGATTCTCTGGACTACCGGGTAAATGATCT 4267888 32 100.0 35 ................................ CTCGATCTGTTTGGTCATGGCCTGGGCGATTTCCT 4267821 32 100.0 35 ................................ AGAATGGCGGCGTGGTTCCGGCAGATTTGGCCGGT 4267754 32 100.0 36 ................................ ATCGTGTCATGCACCTTTAAGACAGTGCTGACCAGC 4267686 32 100.0 34 ................................ GTCAGTGCAGGCAATCATCCAGTTTACGGGCATG 4267620 32 100.0 38 ................................ CGGCGATAGCGGAAGAGGCGGTTTATCCGAAAAGGATC 4267550 32 100.0 35 ................................ CGTACGCCCCGTATACCTATGTAGAACCAGCAAGC 4267483 32 100.0 36 ................................ TCTAACGGCAAAATCCGAACGGAAGTATTCGAAGCA 4267415 32 96.9 33 ......................A......... CCGAACATGTTGCCCGGCATCCGTATGCCGCGA 4267350 32 100.0 36 ................................ AAAGGTCGTCAGGCTATCGCTGTACCAGTTCTTGCC 4267282 32 100.0 35 ................................ GTCCTTAGCGTGGCCCAGTTGCTTTCGGATGTCAT 4267215 32 100.0 36 ................................ GAAAGTGTTCGGGTTTATTGCTGACGATGTAGTCCC 4267147 32 96.9 36 ............A................... TTCGATCAATTCTTTAAAACTCCAAAACCGTATTGT 4267079 32 93.8 36 ..........C.A................... TTTATCCGGAGCACAAGAAATTTCAAACGATAATTC 4267011 32 90.6 0 ..........C.A.........A......... | ========== ====== ====== ====== ================================ ====================================== ================== 48 32 99.5 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGTAAAGCATTTAACTGGCCGAAGCCAAAGAATTCCGAAAAAATAAACGTAGAACAGACGGCAGCAACGGAAATTGAGGACATAAAGAAGCAGTACGATTTGCAGAATTATCGGGTGTGCGTTAACCTGGACAGCAAGAGCGGGGAAAAAGAAGAAATCTCGCTGCTTTCTCTAACGTTTCAACTAAATCAGCTTTTGATGCTGATTAATAACCCGATGTTATTCCCACATAAAGCCTATGTAGATATGTTTAACGAGCGGTATACGAAGGAGTAGCCTTGGAGCATGAACCGGGAAGTAATCGTTCTCTAGCAAAACGGAATATAGTGGCGGTGCGAACCCCAAGCTCACATAAAAATCCCGGGACATTCGCACCTCTCGCCCAGCGCGGGATTTCGGGATTTTACGTCAATACTTACCCCATTTATTAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTTCAAACCCTTGCTGGATGCGGGGTTGAAATGATCGCG # Right flank : AATTTTACGCTGCTCATTTCTTCCATTTTGTGTCGCTCCCTACGAGGGGCTAGAATGGGATTTACTTTCCCAAGAAAGAAAAAAGACTCGCTAACTGGGTACGTAAGAACGAGCCCATAGGTTAATTTTGTACACATGAAGGAGAACCAGCTCACCTACTGTCCAAAAATTCTGAAGAGAATTTCTGGACAGTGAGCCCTTTTACATAAAAATAAGGAATTGCATTTTCGTATAAATTTAAAAAGAAGAACTACGAGTCTGCCTAAAAATCGATGCTTGACTGACGGGTTAGCCTCGAATGATCGATCCATCCGAAATATTTTCTACGCTAACGGTTGTCAGCGCGCCTATTCGGCCGAAAATCGGGGGGTTTCTTTTCTAAGGGTTGTATATGCACTAGCGTTGCAAGAACACTAACATCAATTTTCAGCAAAACCCACATTTGGATTATTGAAACTATAAATGGATTTTTTTACAGTCATTTTTTAAGCTTAAGACCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4282227-4278726 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSI01000001.1 Paenibacillus macerans strain NCTC6355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 4282226 32 100.0 34 ................................ CAACAATCAGGTCTTTTACGAAGATATCGACGAG 4282160 32 100.0 36 ................................ CGCCAGACTGCACCTCCACCGTGGTTGCGTTATACA 4282092 32 100.0 34 ................................ ACAGGACGGGATGGTCAATCTCGCACCAATAACC 4282026 32 100.0 34 ................................ ATTAAATCCACCTCACGTTGTGCGAACATTTGTT 4281960 32 100.0 34 ................................ GTTACGTTATTCAAACGGGGCGGATGGAGCCGAT 4281894 32 100.0 36 ................................ CGATGGATACGCCAATCATCACGCGCTGGGCTGATC 4281826 32 100.0 34 ................................ GGATCATCTTTCTTGTAGTAAACCGGCACTGCGA 4281760 32 100.0 34 ................................ ACCTGATCTTGGTATATGGTGCCCTGGTACAAAT 4281694 32 100.0 36 ................................ TTTCAGGACGAAATGCTTGAAAGACTTACACCAGAA 4281626 32 100.0 33 ................................ CGAAGTTTTATGCATTTTCGCTGCATAATCGTA 4281561 32 100.0 36 ................................ CTCACAATCAACGTGTAAAGGGCGGTGAAATAGATG 4281493 32 100.0 34 ................................ GCCGCTTAGTAGGCGGTTGAATACCGCGCGTGCC 4281427 32 100.0 34 ................................ AATAATGCTGCCATTGACGAACGTCCACTCGTGC 4281361 32 100.0 36 ................................ TGCCGCCACCCATAGCGGATTAGGAGGATAACCATG 4281293 32 100.0 35 ................................ CGCTTCTGACCGATTGTATGTTCTAACCGTCTTAA 4281226 32 100.0 36 ................................ TACGCGGACGGCGTCGGCCTGTTTCGCGGCGTTATC 4281158 32 100.0 34 ................................ TAAAATTTTCGTGCCACGGAAAAGGGGCGGGGGA 4281092 32 100.0 33 ................................ TTGATACCAATATTACACCATAATTACACCAAT 4281027 32 100.0 39 ................................ AGTGATCTCGTCCATCGTCTCCTTGGTCATGTCGAACTG 4280956 32 100.0 33 ................................ TCCCTTGGCTCCCTTTGACCCCTTCGGAAGTGT 4280891 32 100.0 35 ................................ CGACGCGATCCGGATGAACGACTTTTATGACCAGC 4280824 32 100.0 35 ................................ TGTCCCTGTGCAGGAAGCCGGGAGGGTTTGCCGTC 4280757 32 100.0 35 ................................ ACGTGGATAGAGTTTATCTTTGATCTCGTTATAGG 4280690 32 100.0 37 ................................ ATCTTTGAATGCGGATATTAACCTTGAAGAACACATC 4280621 32 100.0 35 ................................ TATATCCGTATAGGGGCTAGCCCCGCTCACGCTTT 4280554 32 100.0 35 ................................ ATGATTTTGCCGCCAGTTACGCGGATAAAGTAACG 4280487 32 100.0 34 ................................ AATATGGTTGTTTACGGCGTTTATGGCAATCAAG 4280421 32 100.0 36 ................................ CAAGCGGAGCGCGACCGGATGCTCGAATTACTTGCC 4280353 32 100.0 33 ................................ CTCAAACTTAGCGTCAAGTTCTGCGGACATGTC 4280288 32 100.0 35 ................................ CAAGACAATGCGGCTGATTGTAAACCTCGTAAATC 4280221 32 100.0 34 ................................ CAGCCCGCTATATGGATTACGGTTTGGCAAAGGC 4280155 32 96.9 33 .............C.................. TTCGGCGTTTGTGCAAGAATATTGAACTTGATT 4280090 32 96.9 36 .............C.................. ATCTGATTTCTTTATCGGGAGCACCTATCGAGACAA 4280022 32 96.9 37 .............C.................. CGCAGCGCTCACAACGCCCTCCAGACCGTTCTAGTGC 4279953 32 96.9 34 .............C.................. TTGAGCACTCTTTTGGGATTGTGCTTTGCGTGCT 4279887 32 96.9 33 .............C.................. TTAAGAAAGTCTTAGAGGAATCGTTGGTGCACA 4279822 32 96.9 33 .............C.................. GATGTAAACGGCCCTGCGCTCATCATGACGAAT 4279757 32 96.9 33 .............C.................. GGTTTGTCCGCCATTTGCAAACGCTTCCTTATA 4279692 32 96.9 33 .............C.................. TACCATGGTATCACCCCTCTATAAAATCAAATA 4279627 32 96.9 38 .............C.................. TCGACGAGATCGAAGAGAAAGCGCCGGAAGCGCCGCAG 4279557 32 96.9 35 .............C.................. ATCGAAAATAACCACGCTGCCATGCACATCCGCGA 4279490 32 96.9 37 .............C.................. ATTGGCATGTTTTAGCCCTCCTTAACCTATAGCAACG 4279421 32 96.9 34 .............C.................. GTCGATATTGGCCGTGATGTTTGTAGCTTTACCG 4279355 32 96.9 34 .............C.................. TGATTTGGCCAGCAAGAAAAAGTATTCATGAGCC 4279289 32 96.9 35 .............C.................. TTCTGAAGATCATTACCCTCATGTGATTGGAGTGT 4279222 32 96.9 36 .............C.................. GTAGCTCTAGGGCTAATTACACTGGTAGCCAAAGTC 4279154 32 96.9 34 .............C.................. AGGTCAAGCCACACCAAACCTTTGCTTAAACATC 4279088 32 96.9 35 .............C.................. TTGCCGGGATCATTGTTTTTTGACCTATTACACCA 4279021 32 96.9 33 .............C.................. GTTAATAATCTTGATGTTGCGTTGCTTGAGATC 4278956 32 96.9 35 .............C.................. GAGTAGGGTTTCCGCACATTACAGCTTATTGAATT 4278889 32 96.9 33 .............C.................. ATCCATACTGAATGCACCGAGAAAGTCTGTATA 4278824 32 100.0 35 ................................ GCCGACGGTCGCATATGTATGCCCATCCCCAAGCG 4278757 32 96.9 0 ........................C....... | ========== ====== ====== ====== ================================ ======================================= ================== 53 32 98.8 35 GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Left flank : CGCCAAATGATCGAGGAATTAATGGATTTATATAGCGGCAAACCGGCCTTTTTGGACGAGTTGAGCCAAATCCATGACGGGTTAAATTAATGAGATCCTCCCTTGGGGAGTTTTTTGTTCAATTTAGAAGTCGTCGCCGCTTGGCTATACGGCCAAATTGACCGATTATTCATGGATGGATATTAGGAAATTTGTGGGGGAAAAAGGTTTTTGGGCGATTGGGATCGAAATAGGTGCGTAAGGCTATGTACCTTTAACGAGAAAGATACGACGATGTAGCCTTGAAGTAATGAAGAGTAATCAATTGGTTGGTAAAAGCGGGAAAGAACAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTGCGGGATATTGCGGCTTTGTTTAACTTGTTTTTAAACCATAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTTTGCTGGATGCGGGGGTTAGGTGGACGGA # Right flank : ATGTAAAATCAATACCAAGTTGCCCCTTAAGATAACGCCACTCTCAAGCCTCAGCGTTCCTCTCTGCACGAGAGGGTGGAATGAAAGAAGGTCTGATTCTTTGCGATTACCAGGATCAATAGCCACTTCCCACATAGGAGTATCTTAATGAAAATTGCCTTTGGTTAAAGGCTTTTTTTGTACACTCAAGGAATGTGGAAATGTTCGCGTGTTTAATGTGGAGTGATTTTAGAGTGAAGCCCCCTCCTTATCAATTGCCTAGATGATTACTCCTTCGCTTAGAGAGAGGAGATAGATAAAGTTAAGGGAGGTTATGGAATTAACGGATTTATAAACGGCAAACCGGCCTTTTAGATGAATTGAGCCCAATCCACGATTAGACAAATTATTGAGCTCCTCCCTCGCGGGGGGAGTTTTTTGCTTAACTTGGAAATCACTGTAGAAATCCGCCCACAAAGGCAATCACAACCCTCAGATTCGTTTCTCACTCTTGCTTTAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Alternate repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 3 4824947-4820911 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSI01000001.1 Paenibacillus macerans strain NCTC6355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4824946 33 100.0 35 ................................. TGCTCAAATACTACGGCAGCGGCGACAGCGGTCAG 4824878 33 97.0 33 ................................G CGTTGCTGCATCTCCTGCTGCACCTTTTGGTCG 4824812 33 100.0 33 ................................. TTTGGCGTCACCGCTGTATCTGCTGCTTTAGGC 4824746 33 97.0 34 ................................C TCGCTCTGACTTATCTGATGTAGTCGTGGAAGGG 4824679 33 100.0 34 ................................. GGAAGTAAAACAGCATTTAGACGGCTGGACAATA 4824612 33 97.0 35 ................................C TTGTGACTTATACCCATCAAGCCGGGATTGACCGC 4824544 33 97.0 35 ................................C CCTGTTTGCGGCTTGATTTTGCAATATATATCAAG 4824476 33 100.0 32 ................................. TGGATTTCTTCCACCACGTCTTTTAGGAGCAT 4824411 33 97.0 32 ................................C GGACGGACTCCAGCGTGATGCGAAACATTGCT 4824346 33 97.0 33 ................................G GTGAATCCCGTTGCCGGGAATCTTAAAAACGCT 4824280 33 97.0 34 ................................A GCGGATGTGCGAGGATGGCCGACTTAAAGCCAAG 4824213 33 97.0 36 ................................A GATATTTGGCGTAAGGCAGGTTGGAACCGACCTCAA 4824144 33 97.0 34 ................................G CAATTACGGGACCAAACTGGCGCGGTCGTATTGA 4824077 33 97.0 32 ................................A TTAATGGCAGCGTGATTGAGCTTGCCTATTGG 4824012 33 97.0 32 ................................A AATGCACATGCTGCCGAAAAGGCCGATCTATC 4823947 33 97.0 33 ................................G TTGATGATCTGCAATTGACCGAGATCAAGCGCC 4823881 33 100.0 34 ................................. CCGTTTGTAGTCGTTCTACTTCGGATAGGAGATA 4823814 33 97.0 32 ................................C ATGTACTTGATGAAAACGGCTATCTGATTTCA 4823749 33 97.0 33 ................................C GAATAAACGGAACAGCTGTCGAGTATTCGACTG 4823683 33 100.0 34 ................................. ACGGTTGGAATCGCAAAAAGGGCGCACACAAACC 4823616 33 97.0 33 ................................A TCGATATCATAAAGAAGCTGCCGAAAGACTCCG 4823550 33 100.0 33 ................................. TCCCGGACGATGTGTTTACGCTTATTCCAGATG 4823484 33 97.0 36 ................................A GGAATTAATTAATTTTGCTGACAATGAAGGTGTAAT 4823415 33 100.0 34 ................................. GCCGGCTGGTGGTTAAACATCGGGGCGGCAAGGC 4823348 33 97.0 32 ................................C CATAAGCCTTGATAACCCTGTCTTCCAGATCC 4823283 33 97.0 36 ................................G AACACGACGGATCGCCGTCACTAGGCGATGCCTTGG 4823214 33 97.0 32 ................................A TCGTATTATTTCGCCTCCTTAAAGATTCCCGC 4823149 33 97.0 33 ................................C CCGTCCATCCTTCAAAACATAACGCTTGATGTA 4823083 33 97.0 33 ................................C CCCGCGGAAGCACCCGTAGCCGCTTTAATTTGG 4823017 33 100.0 35 ................................. TCGATTGGGTCAAGGGAGAGTATCTGACCCCGAGC 4822949 33 100.0 32 ................................. AAGCGTCCGATCCAAATTCCCTCTTCCATCAT 4822884 33 97.0 33 ................................A GGGGATCGAAGGACCGAACGCTTTGAGCTCCAG 4822818 33 97.0 34 ................................C ATCCGTCCAACTCCTGTCTAAAAGCGCATAAAAA 4822751 33 97.0 33 ................................A GGAAATTATCCGCTTTACTGGACTGCCGGTCAC 4822685 33 97.0 35 ................................C AAGTTATCTTACAAAAATTTTTAGCAAAATTTATC 4822617 33 97.0 35 ................................A TCGCGAGTTCGTCGGCCACTACTGCCATAGTAACC 4822549 33 97.0 34 ................................C CTGAAACTCTGCATATGCTTTGTCAAAGGCTTCC 4822482 33 97.0 36 ................................G GAAAATGCTGGAGCAATTAAGGGCGAAGCGTGGAGG 4822413 33 100.0 34 ................................. GGATGCATCTGCAAAGCTGGTCAGTATCGTTACT 4822346 33 97.0 34 ................................C GGTATTTGTAGCAACTTCACGGGCAGCTCTAGCA 4822279 33 100.0 32 ................................. GCTGTAACTGCGCCGCCTGTACCTCTAGCGCC 4822214 33 100.0 34 ................................. GAACATCCTTGTCAGCGGTGATCATCTCGACCTT 4822147 33 100.0 32 ................................. CATATTTGACCATAGCCAGCCAACAACGCACC 4822082 33 100.0 32 ................................. AGGCAAACCAAATAGCCAAGATAGCGGAAATG 4822017 33 97.0 32 ................................G ATCTAGACCCACGCACTGCAAAAAAATACATG 4821952 33 100.0 33 ................................. TGGAAAATAAGCGAAGAAAAGCGCCAAGAAAAA 4821886 33 100.0 32 ................................. GGAGACGGCGCCCAGAGAACGGAACAATCACA 4821821 33 97.0 34 ................................C ATACACCAAGACCCAACACTTTAGAGCCGATTGC 4821754 33 97.0 34 ................................A AAAAGCACGTGGCAAAGCGGGCTTTGAAGGGGCA 4821687 33 97.0 33 ................................C GGTCGGAATGATCGGAGAGCAAAAAAAATTGAA 4821621 33 97.0 36 ................................G CTTCGGGAGTTGGGCTACGAAGTGGAATGGAGGGAG 4821552 33 100.0 34 ................................. GTAAGCCCGCCGTGATCCCGTCCAGGTCGCGGAA 4821485 33 100.0 35 ................................. GGACGAATATGCGTCGAAAGAGCCGCCGCACAAAT 4821417 33 97.0 37 ................................G CGAGTACGCGCCGCAATTTAAAGGCTTGGGCTATAGC 4821347 33 97.0 37 ................................C GGGAAGCAAACGGGATTGCAAAGGGAGAATCTATCCG 4821277 33 97.0 35 ................................C AGTAACATCGTTTGCGAGAACAGTTCCTCGAAATT 4821209 33 97.0 35 ................................G TTAATCTCAAAATCTTTGTGGTCCCGAAACTTCTT 4821141 33 97.0 34 ................................G GGACGTTGAAGGCCGAGTAAAGGCTGCTGCCCCG 4821074 33 97.0 32 ................................G CCGCTGGGAATTATCCTGCGGCTTTTTGCTTG 4821009 32 84.8 34 ........-..C.C.......A..........C CTATGTCTTGAAACTATTTTTAAATGAGCTCTAT 4820943 33 75.8 0 ....T....C.C..C..A.........A...AA | ========== ====== ====== ====== ================================= ===================================== ================== 61 33 97.4 34 GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGT # Left flank : CGACGAATACCCTCCATTTCTGTGGAAGTAGGTGATTATGAATGCTGGTATTGATTACTTACGATGTGAGTACGGTGAATGCCGCGGGACAAAGACGGCTTCGCCAGGTTGCCAAGGCCTGTCAGAATTACGGGCAGCGCGTGCAGAACTCCGTATTTGAATGTATCGTAGATGCGGCGGAATGGGCCGCGCTTAAAATTAAGCTGATCGAATTAATCGATCCGGAGCAGGACAGCCTGCGATTTTACCAGTTGGGCAACCAGTATAAAAACAAGGTGGAACATGTAGGTATCAAAGCCTCTCTTGATTTGGAGGGGCCTTTGATTTTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCAAAATGATTGCATTACATTTGAATAATAGTAAAATAAATCCATTCTATTTGTTTAAAACTAGTCGGAAAATTAGATTTTAATACAGAATATGTAATTTATAATCCATATTCTGTTAGAAATCGGA # Right flank : CGTCCAGCAGAATCGGGAAAGGGCGAGACAGTATTCCAGGAGGGCCATCCCCCTCCTCGCACTTAAAGTAAGGGTTGAACAAGCCGCTAGAGCAATTTACTCCGGCGGTTTTGTTAACTTATAAATCACGGAAGTCAATCTCAATTCCCGCTCACTTGAACAACATAGCCGGCCCTCGATTCAGCAAGTCTGTTTTTTAAAACATAATAAGTAGGTTTATCGCATTCCGCAAAAAACAGGTATCCTTTTAAATAGATTCAAAGCAGGTATAATTACGGCAAAGGAGACAGATCGCATGTTGATCAGGAACGTATATCTGCGCCTGTCGGTCAAGTGGAAGGTCATCCTCATTTTTACCTCGCTGTTGGTGTTCATGAGCGGTTTATTTATCATTGGCTTTAATTACATCAACAAGCTCTATGATCGCCAACTGCTGCATAGCTCTTCGGAATTGTTGAACCTATACTCTACAAATATTGAGAATGAACTGCGCAAGATCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 4834129-4833365 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSI01000001.1 Paenibacillus macerans strain NCTC6355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4834128 32 100.0 37 ................................ TTCCTGCATCCGTAATCACCTCGCCTCCAAGGTAACG 4834059 32 100.0 33 ................................ AGAACAACATCAACAACTGGATAGGCCGGCGGA 4833994 32 100.0 33 ................................ CGAAGCGGTTGCGCGGGAAGACCGCCTTATGCG 4833929 32 100.0 34 ................................ AGCGACTTGGTCATGAAATTTCGGAGCTCTGCGC 4833863 32 100.0 37 ................................ ACGCCGTTATTCCCGGGACTTACGAATTTCGGGGCCA 4833794 32 100.0 33 ................................ TTGAGTTGGTCGAATTGGTCGCGCTGTTCCTGC 4833729 32 100.0 34 ................................ GGGTTAGGCAGGGCAAAGGCTGAGGCGGAACGCG 4833663 32 100.0 36 ................................ CCTTGCGCAATATCCCACGCGCCCGAAACCGTCAAC 4833595 32 100.0 34 ................................ AAAGACTTGATCTCTTTTAGTTGGGTTAATTGTA 4833529 32 100.0 34 ................................ TCCGGGCACGCCGGACGTTGAAACGTAGCAAAGT 4833463 32 100.0 35 ................................ ACGGCGCCGTCCAACGGATTATAAGCGAAGGTCTC 4833396 32 81.2 0 ......................AA.AGCG... | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.4 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Left flank : AGCTTAGGCTTGCAGCTAGTCGTTTGGGTTTTTCATGAAATGATTCTCTTTTGCTATCCATTCCTCTAAACCTTATATTGAGATATAAAAGGCACCACGTAGGGTGTCTTTATCGCTTTATTTTGGTGCTTTCTGCTGTCTTTTTAGTCTCATATTGGTAAACGAGCTCCGTACAGGTAATAAAAATGATCTTTTCTGTGTATGGCTAGAAAAATGAGGTTAAGATTTCATATTCAATCAAAAATATTTGCGAAAAAGGTTTACCCTTAGAGTAACTGTGAAGTAACATTTCAATATACATTGTTTGTACTTTAGCTCAACTCCATATTCGGTGCGAATATAAAGTGAACATAAAAATCCCGGGGGATTCGCACCAGATTAATCGTGCTAAATACCCTTTTTTTCAATAAATACCCATATATAACTTTCAAAAATCCTTAAATTTGGGTTTATATAGATAATTAACTCTAAGATTTTACTAATATATGTTAAAAAACGCT # Right flank : GGCGCCTTCCTTACAGAGTTTATAAGTCATATCTCAATGGACAGTCCATACTGGGCTGTCCTTTTTTAGTTGAAGCTGTACTTTGTTGATATGGGGGCATAAGAGCATATGATAATTCTCTAAACTAAGATGAAAGTAATATTACCCAGAAAATTGTAGAATATTGGAAGGAGATTAGAGGGGGGGTGAAGAAATAAAAAAGTTGTAGTTCTTTAGGCGTGTTTCAAGCTTTAAACTAGAGAGTCGTTTGGATTATTTTTCAGCGACAGGAGGCAGGCAATGGAATACATAGCCCATATACGTGAGAGTGACCGGGAAAACCAATTGCTTGAAACGCATTTGCTTGGGGTCAAGAATTTAGCCGAATCTTTTGGTGCTAAGCTTGGAATCGGGCATATTACCGGCCTGGCTGGAATCCTTCATGATATGGGGAAGTTCACGAAGGCATTTCTGGATTATCTCATCGAAGCGGTGAATCATCCGGAGGCTCCGCCAAAGCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 4863014-4860502 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSI01000001.1 Paenibacillus macerans strain NCTC6355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 4863013 32 100.0 33 ................................ CAACAACCTGGAAGACCTGCCGAACAGCATTTA 4862948 32 100.0 37 ................................ GGCGCGCGGCTAAGAAGGGCTATATCGCGGTCATCAT 4862879 32 100.0 36 ................................ AGACGAAAAGCTTAAAGATCACGTGGATTTCGGCAC 4862811 32 100.0 35 ................................ TGTACTTGGGGAAATCAACATTATCAAAAGTCAAA 4862744 32 100.0 35 ................................ TTCCCATCCACCATCAATGTTTCCGTTCCAAAGCC 4862677 32 100.0 34 ................................ ATTGTCACTCGTAATTCTTTGAATCATGGCAGGT 4862611 32 100.0 35 ................................ CAATCAAATTCATCTTCTCCACAAACCTCAACATA 4862544 32 100.0 37 ................................ ATAAATACCGATCTAAAAAATCGCGGCGAAGGTGACT 4862475 32 100.0 35 ................................ ACCGTTAATTTCATGGGTCACGGTGATTGTAAAAC 4862408 32 100.0 35 ................................ TGCGTGGGCCAAACATCATTGATCCGGCGGACCGC 4862341 32 100.0 36 ................................ CGGCGTACATTTCCCGACCTCCAGCGGTCGATTATC 4862273 32 100.0 35 ................................ AGCGATTTGACGCCCGATCAAGCGCGGAGAAAAGC 4862206 32 100.0 33 ................................ ATAGTACGTTGCGATATTACGCGCATTGATAAG 4862141 32 100.0 34 ................................ CTTGGGGCGGACTTAGCGACTACGTGAATGAGGC 4862075 32 100.0 36 ................................ CGCGGCGAGCCAAGCATTTAAATGTTGCTGTGCAAC 4862007 32 100.0 35 ................................ AAAAGATAAAGGAGAGACAAGGACAATGAGATTTA 4861940 32 100.0 35 ................................ GGCCAAATGACCGGCTTAGTGAACGATGTTATCGC 4861873 32 100.0 35 ................................ CGCCAACACGTCAATTTCGTCCTGAATGCGCTGCA 4861806 32 100.0 34 ................................ GCCGAGCTCGCGGAGATATTTTCCGAAGTCCGCC 4861740 32 100.0 35 ................................ TCGTAGTCGTAGCGTTATGTAGTCGCCGGGTCCGT 4861673 32 100.0 36 ................................ ACCGCGTATCACCAATATGGTTCTAGCGGAGGAAGC 4861605 32 100.0 37 ................................ TCGGTTGCGATCCCTAACATCGCAGACAAGGAATAAC 4861536 32 100.0 33 ................................ TCGGCCAAGACAGCCGCAGGATTTCGTTTGGCC 4861471 32 100.0 37 ................................ GCCCCTCGCGGACCTACGACACGTAAAACGTGACATC 4861402 32 100.0 34 ................................ CGTAGCTTTTATGGCGTCTTCCACGTCTGGACAA 4861336 32 100.0 33 ................................ CTTTACCTTACATATGGCGCATGGGTTTTCAAA 4861271 32 100.0 34 ................................ AGAAAGATATTGGCGCAACTTTTACGGTGCTCTC 4861205 32 100.0 34 ................................ CAGGCTCGGATATCCTCGTTCCCGTCCTTACCTT 4861139 32 100.0 36 ................................ GTCTCGCCCGTCTCCGGGTCAGCGAAGCCCTTCAAA 4861071 32 100.0 33 ................................ CCAACATGATTCGGCATCCTGTTTAATATATTT 4861006 32 100.0 37 ................................ ACATCAGGACAGCGACCCGGTAGCAGACGGGCGTACG 4860937 32 100.0 34 ................................ ATCCCGGCGCTTATCAAACGCCTTCCCCACGTCC 4860871 32 100.0 36 ................................ TGCGAAGACGGATCGTCGACGATAACGAGGTCTGGC 4860803 32 100.0 39 ................................ AAATCTCGAAAGCTGACGACGAACGCACAATTCCATCAA 4860732 32 100.0 34 ................................ CGCTGGCGGAAGCCGAACACGCAAAACGCATAAA 4860666 32 100.0 35 ................................ TTAAGCAACTTTATCTGGCAGCTGGCCAAGCGGTC 4860599 32 100.0 34 ................................ AACACAAGTCGGCGAACATCATACCCATGCTTAC 4860533 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Left flank : ATGAGTACCCGCCATTTTTATGGCAGTAGGTGAGTCGGGATGCTTGTACTCATTACTTATGATGTTCAAACAACAGGCGTGGGAGGGGCCGCGCGGCTCCGGAAAGTGGCTAAGGCATGTCAGAACTACGTGCAGCGGGTGCAGAATTCCGTGTTTGAGTGCATTGTGAATGCAGCCCAGTTCACTGCTCTGAAATTGGAGTTAACCCAGTTAATTGATGAAGAAAAAGATAGCTTGCGATTTTATCGGTTGGGCAATAACTACAAAACCAAAGTAGAGCATATTGGGGCCAAGCCATCGATAGATTTAGAGGAGCCGCTTATCTTCTAGCGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGATTTGTAGAGATTTTGGTTAAAATTAATGGAAAAATTTCGTGCTCGCAAAATGGGTTCGCACTTTTGGGCTTACGAGGCCTTGTGCCACAAGGATTCGCATGGCCCGCT # Right flank : TTATGCGACGCTCACGGCGGAATACCCGGACATAGTCGCACCAGCAAAATGAGCTTTTTCTCGAACAAGCGGTCAAACGATTGAGAAATATTCAGTCCTTAAATAGCCGGGGATAGAGAGGAAAAGTACGGGCGGGGGAATGACGGAGGAAACGGAGGTCCTATACATCGTTATCAGCAAACAAGAGGTGTCCACGCTTAATAAGATTGTCAAATCCATCGACAAATCCGCCTTTATCACCATTCACGACGTGCGGGATGTGTTTGGCGAGGGGTTTTTGGATATTTCGAAGTGAGTGACAAAAAAACGCAACCTTATTTGGTTGTGGTTTTTTGTTTCTCAATAAGTAAGTTGGCAAGACGCTGATAGCACTGTGTGCTCAAGTTCGACCTGGTATAATTTGTTTATGGAGCAACAAGGAGATGGTTACTATTAAGAGTTTTGTGAAAATCAATATAATGAGTTTTGGATACGCGGTAATGTTATCTTTCCCTATACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //