Array 1 18063-16997 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLO01000006.1 Escherichia coli strain MOD1-EC6624 MOD1-EC6624_6_length_190724_cov_23.4463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18062 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 18001 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 17940 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 17879 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 17818 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 17757 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 17696 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 17635 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 17574 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 17513 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 17452 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 17391 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 17330 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 17269 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 17208 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17147 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17086 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 17025 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8967-10461 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLO01000033.1 Escherichia coli strain MOD1-EC6624 MOD1-EC6624_33_length_51576_cov_21.8649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8967 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 9028 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 9089 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 9150 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 9211 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 9272 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 9333 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 9394 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9455 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 9516 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 9577 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 9638 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 9699 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 9760 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9821 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 9882 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 9944 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 10005 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 10066 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 10127 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 10188 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 10250 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10311 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 10372 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 10433 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //