Array 1 70004-70938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAYW010000022.1 Klebsiella pneumoniae strain NMI1183_20 NODE_22_length_76112_cov_77.540172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70004 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 70065 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 70126 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 70187 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [70241] 70241 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 70302 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 70363 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 70424 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 70485 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 70545 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 70606 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [70617] 70668 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 70729 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 70789 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 70850 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 70911 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 183193-180543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAYW010000004.1 Klebsiella pneumoniae strain NMI1183_20 NODE_4_length_389287_cov_34.259573, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183192 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 183131 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 183070 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 183009 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182947 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182886 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182825 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182764 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182703 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182642 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182581 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182520 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182459 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 182398 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 182337 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 182276 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 182215 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 182154 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 182093 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 182032 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181971 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181910 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181849 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181788 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181727 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181666 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181605 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181544 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 181483 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 181422 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 181361 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 181300 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 181239 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 181178 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 181117 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 181056 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180995 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180934 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180873 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180812 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180751 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180690 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180629 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180571 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //