Array 1 2406672-2405651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054505.1 Flavobacterium columnare strain F2R60 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406671 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406605 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406539 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406473 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406407 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406342 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406277 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406212 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406146 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406080 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2406014 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405948 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405882 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405816 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405751 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405686 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975672-2973278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054505.1 Flavobacterium columnare strain F2R60 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975671 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975657,2975668] 2975599 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975533 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975467 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975402 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975293 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975281] 2975222 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975156 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975090 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975024 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974958 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974892 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974826 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974760 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974694 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974628 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974563 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974497 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974432 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974367 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974301 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974235 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974169 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974103 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974037 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973971 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973905 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973839 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973773 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973707 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973642 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973576 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973510 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973445 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973379 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973313 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //