Array 1 104383-103501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWPA010000016.1 Klebsiella pneumoniae strain F3 isolate F3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104382 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 104321 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 104260 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 104199 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 104138 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 104077 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 104016 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 103955 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 103894 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 103833 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 103772 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 103711 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 103650 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 103589 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 103528 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CAAAGGCTCAGGAGGTCTTCCCCACGCACGTGGGGGTGTTTCTCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGCGTCTTCCCCACGCACGTGGGGGTGTTTCCTGGTTGACGTATGCCGTGATGCTGCTGGTAGGGTCTTCCCCACGCACGTGGGGGTGTTTCTACCCCGTACCCGACCCGCTCTAAAGTGACCGGGTCTTCCCCACGCACGTGGGGGTGTTTCCAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTCGTCTTCCCCACGCACGTGGGGGTGTTTCTTTTGCACAAGTATAAAAAGTGTAATAAAAATCGTCTTCCCCACGCACGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCACGTGGGGGTGTTTCTAGCGGTGGTGGCCATCGATAACCTTCACGCCC # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104991-104597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWPA010000016.1 Klebsiella pneumoniae strain F3 isolate F3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104990 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 104929 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 104868 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 104807 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 104746 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 104685 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 104624 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTTTGCACAAGTATAAAAAGTGTAATAAAAATCGTCTTCCCCACGCACGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCACGTGGGGGTGTTTCTAGCGGTGGTGGCCATCGATAACCTTCACGCCCGTCTTCCCCACGCACGTGGGGGTGTTTCCGCTGTATGCCCCCCATCCTTCGCAAGCACTACGTCTTCCCCACGCACGTGGGGGTGTTTCCGATGACAACTTTGCCTACTTCGCTGCGCTGGCGTCTTCCCCACGCACGTGGGGGTGTTTCTTCCTCTTCTTCCTGACAATCAGCGCAGCGCTGGTCTTCCCCACGCACGTGGGGGTGTTTCTGCGGGTGGATGACAATAACGCCTGGCGCGCCGGTCTTCCCCACGCACGTGGGGGTGTTTCTTCTTCATTAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 114261-113744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWPA010000016.1 Klebsiella pneumoniae strain F3 isolate F3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 114260 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 114199 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 114138 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 114077 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 114016 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 113955 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 113894 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [113889] 113832 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 113771 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //