Array 1 8797-8649 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRZB01000069.1 Halomonas sp. FME20 NODE_127_length_15664_cov_266.515, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8796 28 100.0 32 ............................ ATCTTCGGGAAGCCGTGGTGATGTTTGTCAGG 8736 28 100.0 32 ............................ GACGATTACATGCTGGGTACAGGCTACGACCG 8676 28 89.3 0 ........................T.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTGAACCGCCGAATAGGCAGCTGAAAAA # Left flank : GAATATGGCGGACGAAGGATTTATTAACGTTAGTGATATTGAAATAGTTCCAACGACATTAGAGGAAGTGAGATTTATTAGAAATCAGCATGTTGCTAAATCTTTTCCAGGCGAAATCAAGAGACGGCTGATCCGCAGCAAAAATCGAGCTGAAAAACGTGGCGAGACGTTCATACCTGGCAGTGTTGTATCAGATCGCGTCGTTGATCACTGCCACGTAATTCCTATTGATAGCCGATCGTCAGGCCAACGATTCCCGCTGTATGTGCAGTATGAGGCGCTTGGTGAAGAAAGCCAGTGCGATAGCTACAATAGCTACGGGTTGGCTACAAAACAGACACACTTTGGCTCTGTGCCAAATTTTAAGCAGATTACCTAAATATTTTAAGAATATATTGTTATATTTTTCAATAACTTACTTAAGATACGCCAAAAAGGGTATTTTTATCGTTTTGTACTTATCTTGTTGATGCCTATATTTAAACTGCTAGCTAGGTCTA # Right flank : AGGACTGGAAGCCAGCAACGGTAATGATACACACCGCCGCAAGGCAGCAATAGTTCTAAACCCTCCAAGATTTCTTGGAGGGTTTTTTTGTGGTGCTAAGTGAAGGCTATTTCTGAAGATGAGTTGGTTTGCTCTTAGCCCGCCTTATTCATGAGGCCGGCCTGAAAACGAAGATAGCGGATGGTATTCTCTTGAAAATTCAGTGTGTTCCGTCAAGAGCCTGAACCAAGAGAGCCACCCGCTATGGGTGAAAGCCTATCCACCTGGACGCCCTCGTGCAACGGCGCTGTCCGTGTCGAGCTGAGCGGCCAGCGCACCACCAGCGACAGCGGCGCTTTGCTGCTGCGTGAAGCCCTCGACAACAGCGGCGTGGTCGAGGCGCTGGAAGACAATCTGGTCGACCTCCGTAACCCGCTACGCATCCGTCACTCACTGGCCAGTCAGCTGCGTACCCTGGTGCTGCAGCGTGCCATGGGCTGGATCGATCTCAGCGATACCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCGAATAGGCAGCTGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30896-29950 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRZB01000002.1 Halomonas sp. FME20 NODE_3_length_180066_cov_413.217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30895 29 100.0 33 ............................. CTGCACTTCGTTCTCGTCGTTGCGATACGCCAC 30833 29 100.0 32 ............................. TGTTCCGCCTGCGTGACAAACTGACAGTAGCC 30772 29 100.0 32 ............................. TCACTATACGCAGAGAAGGGGAGAGGAAATGG 30711 29 100.0 32 ............................. GCAGCAATGTGACGCTGGCCTGTCCACTGTAC 30650 29 100.0 32 ............................. CCTGGTACATCGTCCAGCCTTCGCGGTAGCCC 30589 29 100.0 32 ............................. CCTACGGCCATGAACAGGACAATTCAGTCCTC 30528 29 100.0 32 ............................. CAATGAACCTGTAGTGCGCCAGATTGAGCGAG 30467 29 100.0 32 ............................. AGCCATTACATGGGCGACGCCTTCGATAGACG 30406 29 100.0 33 ............................. CCATGCTGCTCGAGCAGATCAATAGCGCGCTGC 30344 29 100.0 32 ............................. CGTAGTGCTCTGGGAAGACGTAGTCGCCACTG 30283 29 100.0 32 ............................. GGGCTGTGATGGTGACGAACAAACCGCGAATC 30222 29 100.0 32 ............................. TGCATGGGCCATGGTACGCAAGCGCTCGACCG 30161 29 100.0 32 ............................. AGGATGGGAAAGGGTAGGCTGACCGGCAGGAG 30100 29 96.6 32 .......................A..... GGGCCAGTCCATAGGCTGGCAGGCGTAGCATC 30039 29 93.1 32 ..........G..A............... TTGGGGTTGTTGCCCAGCGCTTCGGCAATCTC 29978 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGGTCGAACCGCCACCACCACCGGCCGATGCCGTGCCGCCTGCCATCCCCGAGCCGACATCAATAGGCGATAGCGGCCACAGGAGTCATTAACATGGCCATGCTCGTCGTCGTCACCGAAGCAGTGCCACCCCGCTTGCGTGGGCGGCTCGCCGTCTGGTTGCTGGAGATTCGCGCCGGTGTCTATGTGGGGGATGTCAGTAAGCGTATCCGCGAAATGATCTGGGAGCAGATCGAGGTCTTGGCCGAGGAGGGCGGCAACGTCGCCATGGCCTGGGCCAGTAATCACGAATCCGGCTTCGAGTTTCAGACCTTCGGCGATAACCGCCGCGTTCCCATCGACCATGACGGACTACGCTTGGTGCGTTTTTTGCCACCCATGGATAAGTAGCTGTTTTTAATGCTCTTTAATAATATAGAGCTGTTCAAAAAATGACCAAAATCGCCGGTGGATTTTCCACTGGCGATTTTTCTTTTTGAAAACAATTGACTACAATTAGA # Right flank : ATATTTCTTTCTGCCAGCCGAGCCCAGGCGCGCCATTCCCCGCAAGCGCGCTGGCCACCGAGAAAGTCGCGCAGGTGTGCGAACACGCGGTTACCTTAACGGGTATGAAATGAGAAACGACGGTGCAACAGGCGGCTTGGGGATGGCGGCCTGGGCGAAATCGGAGTATCAAGTAGCGATGTTTTCAAGCGCGCATTTTCAAGTCGTGGCGAGTGGAAAACACGTCGCGCGAACCGTACGAAGGAGGTGGTCATGATGTTACGTTCACTGGGTTGGATGACGGCGGCGGCCATGGGCCTGTCGATCGGTTTCGCCAGCGCCCATGCCGGCGCGGAGCCAGCGAGCGAAGAGGCGTCAACAATGCCGGAAGCGGTCGCCGCGCAAGTGAGCGCTACCTGTGCCTCTATTGATGAATCGCTGGGTATTGCGCCCCAGCACTATGCGATCGACGATGAGATAGGCGGCGACCTGTGGCTCGTGCCGTGTAATGCAGGTGCTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 42019-41868 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRZB01000002.1 Halomonas sp. FME20 NODE_3_length_180066_cov_413.217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42018 29 100.0 32 ............................. CAGGAATGATAATTTCACAGCTCACCCCGAGT 41957 29 100.0 32 ............................. CAAGGATATAGCTGGAGCGGCTTCGCATGACC 41896 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : CGCAAGGCAGCTTTCTGCTGTGGGTGGAGCTGCCCGCTGCGGTGGACTGCGTGCGCCTCAACGAGCTCCTGGCGCAGCATGACGTGCACGTCGCCCCCGGCTCGCTGTTTTCCGCTTCCGGCAAGTTTCGCCAGTGTCTGCGCCTTAACTATGCCTTTACCCTGACGCCTGCAATTGAAACCGCGGTACGCACGGTAGGGGAATTAGCCGGCAAGATGGTGGAAGAGTCGCGGGCGTCGCTTGTCTGAAAGCGACGGAATCAGCCAGCAAGCACACCAGATGAGCGCCCTTCGCGAGTAATCCGCCGTTGACGAATGCGTATGCTATAAGAGAGGCCACGCTTCTTAAAAAACGCTGCTTGGTGCGATTTTTATAGCTTCCTGCAACGTTCTGATTTTACTGTTCTTTAATAATATTCTTTTGGTCAAAAATTGACCTGAATCGCTGGTAGATTTTCTGCTGTCTATTTTTATCTTGCAGAACAGTTATCTACAATTAGA # Right flank : TATATATAAAAAGAAGGGGTATAAGGGTGTACACATAATGCCTATTCATTATTGATGCGTGTGGCGTTACGCGCTACAATTTATGCAGGCTCGGCGGCAAGGGAGGCAAAGCGATGCGATGATAAAGAAAATCAAGCACAAAGGCCTGAAACGGCTTTATGAGCGGGGGGAGCCCCAAGGAGTACAGCCTAACCATGTAGACGATTTAAGAGACATACTGGCAGCACTGGATGCCGCAACCAAGCCAAACGATATGGATTTACCAGGTTTTGATTTCCATGGCTTGAAAGGTGATAAGAAGGGCTTTTTTTCAGTGCATGTAAACGGTAATTGGGTAGTGATATTTACGTTTGATGGGGAAGATGCACACCTTGTTGACTATTTAGACTACCACTGACGGCGGCGCTCCTTGATAACCGATACGATACGGTTATCAAGGTCCACCGAATGGGATGGTTTCGCCACTTGAGCGGTAGCCACGATTGCACAGCCTCTAAATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //