Array 1 1774819-1776291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071944.1 Yersinia pseudotuberculosis strain 598 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1774819 28 100.0 32 ............................ AGATACAGGCGAAACCATATTTTATATGAACC 1774879 28 100.0 32 ............................ GCTATCGACGCCGACAAATCCGTCAGCAGAGA 1774939 28 100.0 33 ............................ TTTACGATACAATTAATCTCGGTCAATGTCTTG 1775000 28 100.0 32 ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 1775060 28 100.0 32 ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 1775120 28 100.0 32 ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 1775180 28 100.0 32 ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 1775240 28 100.0 32 ............................ GCTGAATCTACGCCATCACTCGCTTTCTGAAT 1775300 28 100.0 32 ............................ AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT 1775360 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 1775420 28 100.0 33 ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 1775481 28 100.0 33 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 1775542 28 100.0 33 ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 1775603 28 100.0 32 ............................ CGGATAAAGGTCCATCAATGACAAGCTGAAAT 1775663 28 100.0 32 ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 1775723 28 100.0 32 ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 1775783 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 1775843 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 1775903 28 100.0 32 ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 1775963 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 1776023 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 1776083 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 1776143 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 1776203 28 100.0 33 ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT 1776264 27 85.7 0 ...................-A.A.C... | T [1776288] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCACCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2714290-2712702 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071944.1 Yersinia pseudotuberculosis strain 598 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2714289 28 100.0 32 ............................ TAGCGGAATGAAAGGTAATTTACTGACCATCT 2714229 28 100.0 32 ............................ ACTGACTTAGCCAGCCGCGCCATCTCGTCATC 2714169 28 100.0 32 ............................ TTTCCCGGCATTTTGTCGGGTACTGTTGTTGA 2714109 28 100.0 32 ............................ ATCGGTAAAGATGCCTTTAAAGGGCTACTGGT 2714049 28 100.0 32 ............................ TAACGTCCAAGCCTTCCTCCAGTCCGTACAGT 2713989 28 100.0 32 ............................ GGTTGGAATCAATGTCATATCCGTCATGCTAT 2713929 28 100.0 32 ............................ AGAAAATAGCGGATGTGGCATCAGGAGGATAT 2713869 28 100.0 32 ............................ AATTGAAATAATGGTTAGTGGTAACGGGCAAG 2713809 28 100.0 32 ............................ GTCAACCTTCGGATGATTATACGGTGCTTTTT 2713749 28 100.0 32 ............................ CCCAGCCGGATTTCCGCTTGCGTTCGTTGTTA 2713689 28 100.0 32 ............................ TGTGATTTAGCGGCGGCCTGTGTGCGCCTGTA 2713629 28 100.0 32 ............................ TAACACAGTAACTTCCGAGGCCGATGATGGTA 2713569 28 100.0 32 ............................ CGATATGACGCAGGCGGTCAATCAGGCCATCT 2713509 28 100.0 32 ............................ TATACCGAGAAGCATTACAACGAAAACACCGA 2713449 28 100.0 32 ............................ TGAGTAGCATTCCTGCTGATGGTCTCACCAAT 2713389 28 100.0 32 ............................ ATTGATATCAATCAATCCATCTATCACGCCAG 2713329 28 100.0 32 ............................ TTGCGGAGTTCAATCACGTAAACCTGATTGTT 2713269 28 100.0 32 ............................ ATTCCAATCATCAGTAACGTGTGTTCTTTCCA 2713209 28 100.0 32 ............................ TGATAGGGTACATGTGTTCTTAAATTTCTAGC 2713149 28 100.0 32 ............................ ATCTTCTACCTCGGCTTTTAATTCCTGGACTT 2713089 28 100.0 32 ............................ GACACGTTGGATGAAGCACAACAATTAATTAT 2713029 28 100.0 32 ............................ TGTAAATTCATAAGATCTTTTAAATAACTCAA 2712969 28 100.0 32 ............................ TTAAAATTGTTGATGGCATAGCGATACTTTTC 2712909 28 100.0 32 ............................ TCGAATATCTGGGTGGTCTTGGCCAGCACTTC 2712849 28 100.0 32 ............................ AAGCACAGCCGCAGTGCTTGCAATGTCCACGG 2712789 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2712729 27 89.3 0 .....................CC.-... | T [2712704] ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATTGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //