Array 1 586153-584120 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGQ01000003.1 Paenibacillus dokdonensis strain YH-JAE5 JAE5_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 586152 33 100.0 33 ................................. AGCAACGCCTGTGCCAAAATTATGGAGGCCGGG 586086 33 100.0 35 ................................. CAATGATCATGATTTATGCTATCAAAAAATTCTCT 586018 33 100.0 34 ................................. TTATATTAGTGCTTATCTTTGACACCACTTTCGG 585951 33 100.0 37 ................................. GTCCGATTTCTAGCACGAGATGGGGTGAGAAATGGGC 585881 33 97.0 33 ................................C GATGAAGGTTACACAGGTATCCTCCAAAGGTGG 585815 33 97.0 35 ................................C CGTCTTTATCCGTGTTGGCTTCATCGGGTGAAGGT 585747 33 97.0 32 ................................T GAATGTCACCGACATGCTACTAACCGCAATCG 585682 33 97.0 33 ................................C TCCTGGATCGGAACCTCAACCGGCTGCTGTGCA 585616 33 100.0 32 ................................. GCTGTGCAATGGTATCATTGTACCCCGCCATT 585551 33 100.0 33 ................................. ACAATAAAAGATACACTAATATCACATCTCAAA 585485 33 97.0 33 ................................C ATGAATACCGCGGCAGCTCGCTCCGATCTCGGC 585419 33 97.0 34 ................................C TATTGGTGCTGGGAAGTCATTGACTGACGCTGTT 585352 33 97.0 34 ................................T GCTCCTGATTGTTCCAATTACGGCATTTGCCGCA 585285 33 97.0 34 ................................T CCTGGTTACTAACCAGGGTGAAACGATCACCCTT 585218 33 97.0 32 ................................T CTGGTAGTAGGTCAACGCTTGTGGTTTTTAGA 585153 33 100.0 34 ................................. CGGCGTTAGAGCCAATACCGTTGATGATGGATAC 585086 33 97.0 34 ................................C TACGAACAATTGAGGAATTGATACCGAAGCCGCC 585019 33 97.0 34 ................................G ATTCCGGGGAGATAGCGAAATCCACCGCCGATCC 584952 33 100.0 34 ................................. CATCAGATACATGCTGAACGTTCGGGAATAGATC 584885 33 100.0 33 ................................. AAATGGCTAGTAACCAATCCCCGAACACCAATA 584819 33 97.0 34 ................................T AGCATATACGGTGACGAGTGTCAATCTAGACCCA 584752 33 97.0 35 ................................T AGCAAATGATGGATTATACGGTGTGTTCGTCACAC 584684 33 97.0 33 ................................T GGATAGTAATAAGTATGGTTGCCTTTTATTTTG 584618 33 97.0 32 ................................T TTGGAACCGACATCCGGACGCCCTCCATATCC 584553 33 100.0 36 ................................. TTGCCGGTATCGTCCTTGATGGTGATCATTTCGCCA 584484 33 97.0 34 ................................C AAGCTTCAATAACCTCTATTTCGGTTGGCTTACT 584417 33 100.0 33 ................................. TTTTTAGCCATGGATTATTGCTCCTCTCGATTT 584351 33 100.0 33 ................................. GGAAACGTCCGATCTCTTCAGCGACAAATACGT 584285 33 100.0 32 ................................. TTATGTTCGGATATGGATTGTGGCTGATTTAT 584220 33 97.0 35 ................................G GAACATAATAAGGGTTAGCATCAAACCACGCTTGA 584152 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 98.3 34 GTCGCACCCTACGTGGGTGCGTGGATTGAAATA # Left flank : CTTGATGAGTATCCTCCATTTCTATGGAAGTAGGTGCAGTGTATGCTTGTCCTCATTACGTATGATGTAAGTACAATGAGCAGCGAAGGGCAGCGTAGATTGCGCAAAGTATCAAAAATATGCCAAGACTACGGCCAACGTGTTCAGCATTCTGTATTTGAATGCATCGTAGATTCTACGCAGTTTGCGGTATTGAAAATGAAACTGATCGATGTCATTGACCAAGAAGAAGACAGCCTTAGATTTTATCAGATAGGCAACAATTACAAAAGCAAAGTAGAGCATGTAGGTATTAAGGAATCTATGGATCTAGAGGGTCCATTGATTTTGTAGTGCGAATGAGAAGCGAACATGATTTTCTAGGGGGATTCGCACCGAGAAAATATCAAAAAAAGATTTATTTTACAATTTAAGTAAGTGTTTTCGACATTGTTAGATGAATTTATCGTTATTTCTAGATTGAAATCCGATTATTTGAGATTTTTTGCTTTAAAATCGGA # Right flank : CACATCCGGATTATCTGACAACCTCGTGTATCCAGGGTTGGATTGTCAACAGTAAATCAAACAACCTTTTTAAGGGCTTCATAGCGATACTGAATAGGCGTCATATAGCCTAAAGTTCCATGAATACGATGGTTGTTAAACCAGTTGACGTAATCGGATAACTCCAGCTCTAGATGACGAAGACTCTGGAAGTTCATCTGGTTCACAAACTCGGTTTTCATGATCTTGTAGGTGGCTTCAGCCACAGCGTTGTCATACGGACAGCCTTTCATGCTTAACGATCGTCCAATTTTAAACGTCTTCAAAAGCTCGTCCATCTTTTGATTTTTGAACTCGCTACCACGGTCGGTATGAAACCACTGAATCTGTCGTAGATCGCCTTGTACCGTCGCAAAGGCGCGGGAAATCAAAGCAGCGTCCTTGTTCGGACCTGCACTATGGCCAATAATTTCTCGATTAAACAAATCCATCAGCACACAAATGTAATGCCAACGGTCCTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 596063-594509 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGQ01000003.1 Paenibacillus dokdonensis strain YH-JAE5 JAE5_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 596062 32 100.0 34 ................................ AACTCCGCATCTTCCCTCATTAAAGACGCCGCAG 595996 32 100.0 37 ................................ CCACAAGTTTATAGATAAAAGCTACTGAACCTAGCAA 595927 32 100.0 35 ................................ ATATCCGAAAAGGCCACTTAAAGGCCGCTAAATTC 595860 32 100.0 32 ................................ ATGTCAACCAAGTTAATGTCGTACCCATCATG 595796 32 100.0 33 ................................ AATTGGTCAGTGAAGTTTTTATTTTGGTCAACC 595731 32 100.0 33 ................................ ATCCCCAAAGGTGGTGTCAAAGATAAGCACTAA 595666 32 100.0 36 ................................ CATTATCATATGGAATTAAATTATTAATTATACTTC 595598 32 100.0 36 ................................ CCGGTGAGTGATCCGTCTGCAATACCACCGTTGGCA 595530 32 100.0 33 ................................ AAAATTTTAAATAACCACGTTGAAAATTGCGGT 595465 32 100.0 35 ................................ ATGCTAACCAAACAGTCCAAGGATACACAAGCGAT 595398 32 100.0 33 ................................ AACCAAAACGCCGTAACGCACAAAACTAAGAAA 595333 32 100.0 34 ................................ CTATATCCCCTTATAATGGAATTATTTAACTAAC 595267 32 100.0 36 ................................ CGTGCAGACAGCAGCAATGAAAAGAGCAAAGATCTT 595199 32 93.8 34 ..............................AT ACAGAGATTAGGTTAAATCCCTTTTCTCTGCTGC 595133 32 93.8 33 ..............................AT ATGTAAAAGGTCATAACGGAGACATGCACAATG 595068 32 90.6 34 T.............................AT TGTTCGACTAAGGAAAGTCGATGGTGTTACAAGT 595002 32 93.8 34 ..............................AT GCTTGCAAATGAACCAGCATAACGCATCCCAAAA 594936 32 93.8 35 ..............................AT ACTCTGATCCAATCCTTTACGAAAAAGGGCAAGAA 594869 32 93.8 32 ..............................AT AGCACATACACACTTATGTCTTTGTCCTTAAG 594805 32 93.8 34 ..............................AT CTGATCAACCCCGTTCTTCGCCTGCTTAATAAAC 594739 32 93.8 34 ..............................AT CCAAGCGCTACAGCAGATGAAATCAAATATGTCA 594673 32 84.4 35 ..T..........CA...............AT GTCTCGATAAAGAGGGTAACAACGACAAAGAAATA 594606 32 78.1 34 ............GC....AT...A......AT TTGGACATAGTGCGAAGAAGTGAGATTAATTGCT 594540 32 71.9 0 A..C......G..C.A.G..A.........AT | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 95.1 34 GTCGCACCCTACATGGGTGCGTGGATTGAAGC # Left flank : AGTTTGATGCGGGAACCGGGCTGCCGGCCTTTACGAAACCCATTCACGAGGGCTTGATCAGCAAAAGGGCAGATCTCAGCAATGGAAAGATACGTACCGCGCTGCGGGGCAGGTTGTCAGGTTCCTATCTGGGACATGTATTCCATAACGGTCCGCAGCCGGGAGACTTGCATTATCAGGTGAACTCCGCAGCCCTGCGTTTCATAACGAAGGAAGAATTGGAGCAGGAGGGGTACGGTAAGTATGTGACGTTGTTTGATGAAGGATAATGAGTTTACGAGTATGAGATTTATGATATTATTTAATCAATTATGATAAATTGGTTTGTTTAGTGCGAATGTCAAGTGCACATAAAATCTCAGGTACATTCGCACCGAAAAAAATTCATTTAAATTACAATTAAACCATTTAAATAGTAAATCGATATTTGATTCTTGGCATATCGTGCGGTATTCATTAATTTAGAAACAATTTTTCAGCTAATCGTTTGAAAAATCGGA # Right flank : CACTGGCTATTATTCCCCATGCTCCCAACACGTTGTAGCTCTGAAAGAAGCAACATAGAAAGCATTCGCAGTGTAGCGAGTGCTTTTTTCGTATTCTTTCTATTAAAAAAATCGAATCAAGTGCATTTAACAATCAAGATTATTTATTTTGTTCTATTTTGTGGAATTATTGGAGGATATTAAATGAAACTATCGAATTATTATGGGAATAGAGAACCATTTTATGATTCTGTATGTATGCAAGGGGGAGTACGATGGCCTATATCGCCCATATTCGTGAAAGTGATTACGTACAGCAATCTGTTGAACAGCACCTGCTGGGCGTAAAAGGTTTAGCTGAAATCTATGGAGAGAGTTTGGGGATCAAGCACATCACTGGACTGGCTGGTATGCTCCATGACTTGGGGAAATACTCGAATGCATTTAGGGAATATATCCTAGAGGCCGTCCAAAATCCTAATTCACCGCCTAAGCGTGGGAGTGTAGATCATTCAACCGCA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //