Array 1 34442-34733 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959993.1 Gemella haemolysans strain DNF01167 Scaffold980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 34442 28 100.0 38 ............................ TCTCAAACAAAACGTATTGACAGTTATTATTTAAGGTA 34508 28 100.0 38 ............................ TCTCAAACGATTACATACGACCAAGCTGATTATTTTAA 34574 28 100.0 38 ............................ TCTCAAACATACTTTTATTGGAATCTCTGTTCTGCAGT 34640 28 100.0 38 ............................ TCTCAAACCAAAGGAGAGTGACTCTAGATGGCAAGGAT 34706 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 100.0 38 GTTTTGTAGAATTCAAAATTTACATATC # Left flank : ATGAAACTAGAGACTATTATTGATGAGATAACGAAGTAAGAGAATGTTAAAAAGCATTTACGTTTATTGTGATTAACGTAAATGCTTTTTTTGTATTTAGTTTCACAATTATTCGCGTTTATGTAAACAAAAATAAGATTATAGATAAAATAACACTCAATGTTATCTCATCAATAATCTTATTATATGCTCAGAAAATTCACATATTTCTAAAACAAAAATTAATTTTTCTACTTTACCACTAAAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACGATGTATCAATTTATGCTAAATCAAATTTCGTTTTGTAGAATTCAAAATTTACATATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATTCAAAATTTACATATCTCTCAAACAAATTGACTGGTTAAGTTTCTCATTTCCA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAATTCAAAATTTACATATCTCTCAAACGAGGCTTACGGATTACCTACAGGTGATAAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACGAAATACTTTTCATGAATAAGAAAAATGTGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACACGTATGAAAGAGGAAACAAAGCAAGACAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACTCAAGTAGGGGTTGCACCTTATCGACAAGTGGTTTTGTAGAATTCAAAATTTACATATCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCAAAATT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTAGAATTCAAAATTTACATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 34893-35058 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959993.1 Gemella haemolysans strain DNF01167 Scaffold980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 34893 36 100.0 29 .................................... GAAATACTTTTCATGAATAAGAAAAATGT 34958 36 100.0 29 .................................... ACGTATGAAAGAGGAAACAAAGCAAGACA 35023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 3 36 100.0 30 GTTTTGTAGAATTCAAAATTTACATATCTCTCAAAC # Left flank : AATTTACATATCTCTCAAACAAATTGACTGGTTAAGTTTCTCATTTCCAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACAAAACGTATTGACAGTTATTATTTAAGGTAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACGATTACATACGACCAAGCTGATTATTTTAAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACATACTTTTATTGGAATCTCTGTTCTGCAGTGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACCAAAGGAGAGTGACTCTAGATGGCAAGGATGTTTTGTAGAATTCAAAATTTACATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAATTCAAAATTTACATATCTCTCAAACGAGGCTTACGGATTACCTACAGGTGATAA # Right flank : TCAAGTAGGGGTTGCACCTTATCGACAAGTGGTTTTGTAGAATTCAAAATTTACATATCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCAAAATTTACATATCTCTCAAACTTAATCTTCTTCATCCCAATCACCAATAGTGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACGATTACATACGACCAAGCTGATTATTTTAAGTTTTGTAGAATTCAAAATTTACATATCTCTCAAACTTTATTAGCTATTTCAATGTCAGAATTTAAGTTTTGTAGAATTCAAAATTTACATAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTAGAATTCAAAATTTACATATCTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //