Array 1 146848-139859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABASV010000006.1 Halomonas alkaliphila strain DSM 16354 NODE_6_length_299245_cov_188.226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146847 28 100.0 32 ............................ TGCAGGCGCGATGTAATAGCTCTCCAGCAACG 146787 28 100.0 32 ............................ CGAGAGCCAGTGGCACACAGCGTGCGCTTTCC 146727 28 100.0 32 ............................ TGGGGCGGGTTACGGGCAGCATGAATATTCAC 146667 28 100.0 32 ............................ ACGTTCATCGCACGGCAAACCGAAATCAACCC 146607 28 100.0 32 ............................ TGGGCGACAGCGCACACACCGCTGCTAGCAGA 146547 28 100.0 32 ............................ TGGATGAAGCCTGGTTGATGCTGGGTAATGAA 146487 28 100.0 32 ............................ GATGACGGTACGGAAAGCCTCTTAGGCTTCCG 146427 28 100.0 32 ............................ TGGATGGCCTGGCACTGAGCCGGTGTCATAAT 146367 28 100.0 32 ............................ CTGCTGGAAATCGAGGATCGCCTGTCTAGTGT 146307 28 100.0 32 ............................ ACCAACGACACCGGCCCGGTGCATGTGCTGCC 146247 28 100.0 32 ............................ TCGATGATAACCAGGCGGTCATCCGGGCAGGC 146187 28 100.0 32 ............................ GTTTGCGCTCGGGGCCATTCATTCACGGGAGA 146127 28 100.0 32 ............................ AAAAGGAGCGCCGGAGCGCCCGCGAGCCAACC 146067 28 100.0 32 ............................ GCGTAGCTTCCTGAGAAGTCTTTGCTGTTTCT 146007 28 100.0 32 ............................ CGCTTCATCCCCTCGCCGTGCCGCTCAATCCA 145947 28 100.0 32 ............................ TGGGACGTATCGGGTCGGCGTGCGCGTTGCCC 145887 28 100.0 32 ............................ AAGCTGGCCGGTGAACAGCTCGGCGGTGCGGC 145827 28 100.0 32 ............................ ACTTCGCTGGCCGGTAGAGCATAAGCCGATTA 145767 28 100.0 32 ............................ ACCCACGACCAGAATATTGGCTCGACGCTGGA 145707 28 100.0 32 ............................ GCGTAGCTTCCTGAGAAGTCTTTGCTGTTTCT 145647 28 100.0 32 ............................ GGCCGGATCTGCTGGCCGGTTGTGAGCGTGAA 145587 28 100.0 32 ............................ TGGGCGTGACCGTCGCGGGCGGTATGCTCATC 145527 28 100.0 32 ............................ AGCAAGCTGCGCAATTCTGCTAGCAGCGGTGT 145467 28 100.0 32 ............................ ACCAACTTACTCGCCTGGCGGCTCGACGAATC 145407 28 100.0 32 ............................ TGGGCGGCAGCGCACAGTTAGGGGGCGGCCAG 145347 28 100.0 32 ............................ AGGACGCCGCGCAAATGGTCGCTGAGGCTGAA 145287 28 100.0 32 ............................ TCGTATAGCAGCGCTATTCGACAATGCATCAT 145227 28 100.0 32 ............................ TCTGCCTTAGCTTGTGCGGCTTCCGCCTCCTG 145167 28 100.0 32 ............................ TGGAGCAAGGTCTGGCGTGGCTGATACATGCA 145107 28 100.0 32 ............................ GAGCCAACAGTTGCACCCGTTGCAGCGCTACC 145047 28 100.0 32 ............................ GCCACCGAAAAGGCCGCTAATGGCTTTAGTGA 144987 28 100.0 32 ............................ TGGTGGCGTTCAATCGCCTGGCTTGGCACACC 144927 28 100.0 32 ............................ GAATCAAGGCGCACTTCTTTACGCCTGCGTTT 144867 28 100.0 32 ............................ CATACCTGCCAATATCTCTTTACGGTCGGCTG 144807 28 100.0 32 ............................ AGAAATGCACCACGCTGATGACCTTCAACCCA 144747 28 100.0 32 ............................ AGCGCTGCAGCACGTATGCGCGCACTCGCCTA 144687 28 100.0 32 ............................ TCTCCAAGCAAAAGGGCTATTCGGCACGGGAT 144627 28 100.0 32 ............................ AGTGATTCCGTAAAATTCTACGGTTAGCGTGG 144567 28 100.0 32 ............................ GTAAGCAGGGTAGGCAGGAGAGACGCGCCTGC 144507 28 100.0 32 ............................ AATCCGCTGCTTCTGGTCGAACGAGTAAAGCT 144447 28 100.0 32 ............................ CAGACAATGGCGGCAAGTACCGCGCAATGGCT 144387 28 100.0 32 ............................ CGGAGGGGTGGCCACTGTTCACGCGAACGGTG 144327 28 100.0 32 ............................ AAACTGATAACGGCGTTCCTGGTCAATCAGGG 144267 28 100.0 32 ............................ CGATCCCCGGCACCGCTACGCGCTTTCTTATT 144207 28 100.0 32 ............................ CAGCATGTAGCTGGCCATTTCGGCGCGTAGTT 144147 28 100.0 32 ............................ AGACAGCAGCGCACAATGGCACTGACTTGGGC 144087 28 100.0 32 ............................ CAGGACACGGCCGGGAATCCCCGGCTTTTTTT 144027 28 100.0 32 ............................ CAGGCCATGCGATTGAATGCCACCAGGCAGGC 143967 28 100.0 32 ............................ AAAAGGGAAGGGGGTTATTCCCCGTCCTTCTG 143907 28 100.0 32 ............................ ATCCTGTCACTGCTCTACGGCGGTGCCTCGGC 143847 28 96.4 32 .........T.................. GTCCGCATATCACGCATAACAGGCCGTGCTTC 143787 28 100.0 32 ............................ TCGCTCATCGACCACCCCCTTTAGGTTCAACC 143727 28 100.0 32 ............................ ACATGCGGATACGTTCCCGGAAAACCTCATTA 143667 28 100.0 32 ............................ AAGGCACCCCACTGGCGAATTAGACGCATGAC 143607 28 100.0 32 ............................ GTGTCATGATATGCCTGAAACCTTCCCGCTCC 143547 28 100.0 32 ............................ ATCGCGCACCAGGGCATGGGTGGCGCGGTCGG 143487 28 100.0 32 ............................ GCTCGCAGAGCGCCGCGTACACTGTCATGGTT 143427 28 100.0 32 ............................ GGTAACTGAAGGCGTACCACTGCCAATGGAAG 143367 28 100.0 32 ............................ ATTAACGCAAGGCGTTGACTATTCCGTTAGCG 143307 28 96.4 32 ........C................... ATGTGCCGGAAGGCAGGCCAGTACGCACGGTG 143247 28 96.4 32 ........C................... ACTAGAGACGAGGGCTTTTTATAATGGCTGAT 143187 28 96.4 32 ........C................... TTCACAAGACCACTTAGACCCTTTTGGGTTGT 143127 28 96.4 32 ........C................... AGCAATACAGCGCCACCGCAGCGGCGCATGTG 143067 28 96.4 32 ........C................... CTTGCCCGGGCAATCGTAGAAGCCAACTTCAC 143007 28 96.4 32 ........C................... AATGGCTCGGTACGACATACCGTCCTTCTTCA 142947 28 96.4 32 ........C................... TAAACCTCTTCGGCCATGAATTGGTGGTCGAT 142887 28 96.4 32 ........C................... ATTAATTCGCTGGTCAACTGGATACAACAATA 142827 28 96.4 32 ........C................... ACCATCCCGCTCTCTGCGCTAATCCTGAATAT 142767 28 96.4 32 ........C................... CTCAGCGGAACACGCAGGAATGAACGCTCTGG 142707 28 96.4 32 ........C................... CTGCTGGAATTGATGGGTGACGAGCAAGGCGC 142647 28 96.4 32 ........C................... AAGAGCGGATGTTGCCCGGCTCAGTAATCAAA 142587 28 96.4 32 ........C................... TGATCGCGCTGCGGGCGGCGTGCAGTCGTTCG 142527 28 96.4 32 ........C................... AGGCGGGCATGGCCATTGCCGTTGATCACCCC 142467 28 96.4 32 ........C................... TGCTGATGTGTGGGTTTGTCGATGATAGCCAA 142407 28 96.4 32 ........C................... ATACAGTGATTGCACCGCTTCAATTTTAACGC 142347 28 96.4 32 ........C................... AATCGTGCCATGGATGGAATGGGGGGCGATGT 142287 28 96.4 32 ........C................... TGTACACGCTGACAACTGGCCGCCCCCTAACT 142227 28 96.4 33 ........C................... AAACTGGTGTCCTCATTTTCGGGAGTTTATATA 142166 28 96.4 32 ........C................... CGATGCAGGTGGTCCTGTGCCACTTGCGCTGG 142106 28 96.4 32 ........C................... CGATGCAGGTGGTCCTGTGCCACTTGCGCTGG 142046 28 96.4 32 ........C................... GCCTGCTTAATCAGGTCGCGGCGGGCCAGGCT 141986 28 96.4 32 ........C................... TACGTCAACGGCTCGTTAGTCGATCAAACAGC 141926 28 96.4 32 ........C................... AATCCGATATTGATAGCATCGAACAGGCTAGC 141866 28 96.4 32 ........C................... ATGACACTCGCCGAACTGAAAGCTAAATATAA 141806 28 96.4 32 ........C................... ATGCGCCTGCGGCCGGATCGCATCCTAGTGGG 141746 28 96.4 32 ........C................... AGTAAGGCCTGTTAGCCGGATAAGCTCCCGGA 141686 28 96.4 32 ........C................... TGCAACGCGCTCGGCAATTCAGGGAAGATCTT 141626 28 96.4 32 ........C................... AGAAACTGAGGGGTGAACGGCTCGGCATGACA 141566 28 96.4 32 ........C................... GCGCAGGCCTTCCTGTATTTCCTTACCTTCAT 141506 28 96.4 32 ........C................... TAGTGGAGTTCGGCTCATACGAACTAGGAGAG 141446 28 96.4 32 ........C................... TAGCGGCACAGCTCATTAAGCATTGCGGCTTG 141386 28 96.4 32 ........C................... GCATAGATGGTGCGCTCTGTCGATGTCGCCAG 141326 28 96.4 32 ........C................... AATGCCTACCACGGTATCAGGGAACCCTGAGT 141266 28 96.4 32 ........C................... CCGCCCCCAACACAGCCGACGTTCTCGACGTT 141206 28 96.4 32 ........C................... TGCCTGTCGCCGGACAAATCACAAAAGGCCTG 141146 28 96.4 32 ........C................... ATCCACTCGCCTTTGTCGATGACGGCGAGGGC 141086 28 96.4 32 ........C................... CGCCTCAGTGCCGACTAGTCTACTGCTAACGC 141026 28 96.4 32 ........C................... AGCAGGAAAGCGGTGGCCAACAGTTTGGCGAG 140966 28 96.4 32 ........C................... ATCCGATGGTGGCAACGCATCCAACAGCCCGG 140906 28 96.4 32 ........C................... TGACTAACGAGCAAGCCAATAAGCTGGTAGCC 140846 28 96.4 32 ........C................... TGAGTGCCTGAAATAGCCTCAAGAACATCAAG 140786 28 96.4 32 ........C................... ACAGCAGCATCGCGCGCCCGCTCGTCAGTTTT 140726 28 96.4 32 ........C................... AAAGCCTTCAAGAGGCGTTGCGCCTGCTGTCG 140666 28 96.4 32 ........C................... CCAAAACATCAAGATCATTTAAAATAGTATTA 140606 28 96.4 32 ........C................... TCGGTTTCAGTTGTCCACGCGTCGCGCTCTGC 140546 28 96.4 32 ........C................... AGGTGTACCAGTAATTAAAGTAATCATGAGAA 140486 28 100.0 32 ............................ GTTGTCACGGGGCGCGCTACGGGTGAGGCTGC 140426 28 96.4 32 ........C................... TGTTCGTGAGTTTGTTAAGATGTATTCTAATT 140366 28 96.4 32 ........C................... TTTGCAATGGCAACGTTTTTTTCTTTTAACGA 140306 28 96.4 32 ........C................... TTTGCAATGGCAACGTTTTTTTCTTTTAACGA 140246 28 96.4 32 ........C................... TTTGCAATGGCAACGTTTTTTTCTTTTAACGA 140186 28 96.4 32 ........C................... TTTGCAATGGCAACGTTTTTTTCTTTTAACGA 140126 28 96.4 32 ........C................... TTTGCAATGGCAACGTTTTTTTCTTTTAACGA 140066 28 96.4 32 ........C................... GTGAATCGTTTACGCCGCTGGCCACGCTGTTT 140006 28 96.4 32 ........C................... CAAGACTGAACGCCAACAATCGTCCCGACCAA 139946 28 96.4 32 ........C................... GCTGCCGTGACCGAGTGGGATGACAATCTCTC 139886 28 75.0 0 ........CT............TT.GTG | ========== ====== ====== ====== ============================ ================================= ================== 117 28 98.0 32 GTGCGCTGTCGCCCAGGCAGCTCAGAAA # Left flank : CGCGGCTGAAGCAACTGATGGGCGCTGACTGGCTAACCGGTATGCGAGACCACGTTAGCGTCAGCGAAGCGTTGGCAGTGCCTGCAAGTGCAAAGCACATCAACGTAGCGCGCAAACAGTTCAATACGGGCAGCCCAAGCCGCGCAAAACGCTACGCTAAACGGCATAACATCTCAGAAGATGAGGCACGGCAGATCTATGCCAAGTTGGCTGAACGGCGTATAGAGCTACCCTTTGTACAGATCAATAGCCGTTCTACTCAACAGCGATTCAGCCTGTTTATAGAACATAGCAAAGCTCATGAAAACGCAGTGGCGGGTGCGTTTAACCACTATGGTTTAAGCAGTAACGCTACCGTGCCGTGGTTTTGACCCTTTTTTTCAGTATGAAAATAGGCAACCAATAATCAACCACTTAGCGGTGTCGCTCAAAAAAGGGTGATACCGCTTTTTTCCATCGAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : CTACCTGAAACTGGTATCGCTGTGCAGTGCTTTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATGTGCATTACCTTCATTAATTAGTAAGTTAGATGTTGCCATCCAGGTAATTCAGCGCTCAACAGTTGTGAATACTCTCTCAGTTTCGGCGTTATTAGCACGATGGTGCTTGAATTGTTAAATATGATGAGGACGAGAATGTTCCAAAATAAAACTGCTTTAAGATAATAATTGCTGTGTGTTTCGGTAACTGCCATCTAGAGGATATTACGTCGTGGAAAACTTTCTTGAGCAATTTGGGGCTTATGTTCCTTTGATCATCAATGCCGTGAAAGCATTGTTGGTGTTGATTGTGGGCTGGGTTGTCGCAGGGGTAGTCAGCAGCTTAGTGCGTAAGCGGGTGAATGCGATACCGCGTATAGACCCAACTCTGGGCAACTTCCTTGCAGCCTTGGTGAAGTGGGTCATTCTACTGGTTGTATTGATTACGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGTCGCCCAGGCAGCTCAGAAA # Alternate repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //