Array 1 71775-71257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQD010000009.1 Gluconacetobacter aggeris strain LMG 27801 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71774 29 100.0 32 ............................. ATCGAGATCGATACCGATCAGCGCCAGCCTGC 71713 29 100.0 32 ............................. CCGTTGCGACGGCTGGGGCAAAGAGTCCTGAA 71652 29 100.0 32 ............................. AATCCGGCCGCGATCAACATGCTCATGCAGTC 71591 29 100.0 32 ............................. CGGGCATTGGCATCGGACTGGCATGTCGCGAA 71530 29 100.0 32 ............................. GCCTCGAGCGTCGCCGCATGCGCCCTGCCGCC 71469 29 100.0 32 ............................. TCCATCCGGTTGCAGAGCTGATCCGCCTTTGC 71408 29 100.0 32 ............................. ATCTGAGCGTGCGATGCCTGCCGCCCCATGCC 71347 29 100.0 32 ............................. GGCTCCGGGCATGCGCGGTCGCCCGGCGCAGC 71286 29 82.8 0 A........A.CC.............T.. | A [71280] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : GGTTCTGGCGGCCGGCGGCATGGACATGCCGGTCGCTTCGGATGAGGCCATGCCGGTTGCGTTTGACGACTCTAAAGGCCTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCCCGCTTGAGGGGGCGGCTCGCCGTCTGGCTGTTGGAAGTTCGGGCAGGCGTCTATGTCGGCACGTATGGGCGCCGGGTGCGCGAGATGATCTGGGGTCAGGTCTGCGCCTATATTGAGGATGGTAACGCCGTCATCGCCTGGGCAGCACCGAACGACGCCGGATTCGCATTCGATACCTGCGGACGCAACCGTCGAGTGCCTGTGGATTTCGACGGGCTCCGGCTTGTCGCATTCGGGACAGAGGCGGCACTTCCGACCCAGCCCGGGCCAGCCGCTACCCCACCACCAAGGCGGCGCAGACCTCGCTGAAACGAGGGCTCTTTGGTCGGTAGAATTTTTGACAAGGGAATAGGTGTTTTATATCAATTGTTTGATGGAAGA # Right flank : AACAGGAAAACCGTCTGCTACGAGTGGTATTCGTGTCCTGGCCCGGCTGACGCTGATCAATGAAAGCCCCTATTGGAATGGCGTTGCGATCTTTACCTGCGACGGCGATGACGCCGGGCGTTCACCCATGGGGGAGGTGGGCATGACGGGTGTGAACGTGCCGATTCCGGTACCGGTACCGGAATTCGCGATACCGGCGCACGGTTGATGATGGACGCGGGTTGTGCGGAAGCCTGCCCCCGAGCCACGTATCACGGCGTAAAAAGACTTTTCAATTGGAAATTACTGTCTGTAAATTCTTTACAGAAATACAGCGCGAATACCGGTTTCCACCTTCCGGGATGGGGTGTGATGGCGTTAAGCCTTGTGACGCCACGCTTCCCAAGAATACGGAAACCGTCACATGTCATATCAGGAATCGGCAACCGCCAAGCTCAACCAGATCATCCAGGCCAAGCAGGGCACCTGGGGCGGGATCAATCCCGACTATGTCGTGCGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82835-80975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQD010000009.1 Gluconacetobacter aggeris strain LMG 27801 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82834 29 100.0 32 ............................. GCGAGAAAGAAAACGATCGCGGATTTCGTCAG 82773 29 100.0 32 ............................. GACCGGTTCGTATGGAGTGAGGCCGACTATAT 82712 29 100.0 32 ............................. CAATCCCAGTGCCACCAACGCTATTCGCGACC 82651 29 100.0 32 ............................. AGCACGCGGCGCCTCGACCCGAAACGCTGTCA 82590 29 100.0 32 ............................. GGATAAATGCATCGTCCATTTTCGAACATAAT 82529 29 100.0 32 ............................. AGCTGATCAACATCCTGGTCAAGGCGGGCATT 82468 29 100.0 32 ............................. TAGAACGTCACGCCGCGCCATGCGGCCGTAGC 82407 29 100.0 32 ............................. GAGCCATCAGCATGGATGCGGACGGTCTTGGC 82346 29 100.0 32 ............................. GACGTTGGCCAGCACGTTCAGCGCGCCGATCA 82285 29 100.0 32 ............................. GCCGTTCCGCTGGATGAGTTCATCAAGATCGT 82224 29 100.0 32 ............................. ACGTTCTCGATGTGCGCGGCCGTGATGGAGCA 82163 29 100.0 32 ............................. CTCGCTCGCAGTCGGCCAGCGGGACCCGACCG 82102 29 100.0 32 ............................. GAGCAGGGACGCCTTCCCCCGGAAGTGCAGGA 82041 29 100.0 32 ............................. GCGCCCAGGTGTGCCGGAATTTGGCTGGTTCT 81980 29 100.0 32 ............................. GGCGCCCCGGTATTATTTGAGAGCGTCACTAG 81919 29 100.0 32 ............................. ATGAACCAGCTTCAGGAGCAGACGCGCCGCAT 81858 29 100.0 32 ............................. ACCAGGCGATGATTGCGGTGCTCGATCCAGGC 81797 29 100.0 32 ............................. CCGCTGTTGCCGCCCTCCAGTCCGAAATCGCC 81736 29 100.0 32 ............................. CGCTCGGCATAGGTGATGACACGAATGCCATC 81675 29 100.0 32 ............................. GGCTCCTATGTCGGCGCCACGCGCGAGGATGG 81614 29 100.0 32 ............................. GGCCCGACGGTAAATATCCAGCAGCGTTTCCT 81553 29 100.0 32 ............................. CGTCATTGTCTGGGTCCTTTTCTCTCTTGACC 81492 29 100.0 32 ............................. CAGCGCGAGTGGTGGAGTCGTACCATTGGCCA 81431 29 100.0 33 ............................. ACCACCAACGGCGCCGCATTGATGCTGACGTCC 81369 29 100.0 32 ............................. GTAGCGCGATCGGGCATGACGCGCGCGTATAG 81308 29 100.0 32 ............................. ATCGACGGGCTGGGGCGCACGGCCGATCACGC 81247 29 100.0 32 ............................. GCGGCCTACGACACGATGTCGGCCTACCACTT 81186 29 96.6 32 ..............T.............. GGCTCGACATAGCAGTCGTGTGGCGGAAAATG 81125 29 100.0 32 ............................. GGTGCCATCCTCGCGATCAACCCGGCGATCGG 81064 29 100.0 32 ............................. TGGCTGGCACCGATCAACATCCTGGACACGCA 81003 29 93.1 0 .......................C...T. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGCCCGAGACGGCAAGAATGGCGTCGGGGCGCCGGGGCAGCGTCGCGGCCAGCCCGCGCAGGTAGGCGGCCATATGGTCCCAGGTGTCGGGCCAGTCCATGAAGAAGCAGGGGCCGCCGCCATGGGGCAGGAACAGGACCGGCTGACGCGCGGATGCGACGCTGGCCTGTGGGGCGGGGGCTTGCGATTCCATGATGTGCTCCTGATGGGTGAGGGGCGCGGATATCATGCCATGGTTGAGGCACCACGATAAGCCCGGGCTATCGCCAACCACCCCGATTCATCCCATCCCGCTTGGAACGTTTCCGAAGAGGCTATAGCTGGCTTTGCAACGATCAAAGAAATTACATTGGTTAGCTGGAGCCTTGGGACGTATATCGGAGTCGGGTGTCTGGATTACTCTCTGGTGGCAGAAAGAGAGGGTGATAAAATGACGCTCTATCATCGGTGGAATCTTTGACATGAGAATAGCCTTTTAATATCAATGCGCTCTGGGAAGA # Right flank : GTGGATCGCGGTGTCGCCAATATCCGGAACACGTGTTCCCCTCACACGGGGATATTCTTTGTTCAAATTCTATATTGTCTCATCGATTAGATTTTCCCCTCATTCTGTGTGAGGCTGGGAACAGGTATCTCATCGCCATCCCGTTATCTCTCCGGGCGAGGCTTGGAACAGATCGTCCCGTCTGACGAGGGAACCGCGCTGGCGCATAAGAAGTGGGGGGAGGTCGGGTGTCTATTTCAGGTGAGGACGGGCTCTCACTATTCTGGGGCAAGGCGCGAGCGGGTGTGTTCGGGGAGTCTGGTCTTTCAGGTCCTGCCATGCATCCGCTTGTCGCCCATATGCTCGACGTTGCGGCAGTAGCGGTTCTTCTGCCTGGATGGTCACAATGCGCGCTCGACAGACGCCAGATCGGTTTTCTGGTCGCTCTGCATGATATCGGCAAACTGACGCCAGGTTTCCAGGCGAAGGTGCCGGAGCATTGGCCCGCAGCGGTGTTCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 139820-138057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQD010000010.1 Gluconacetobacter aggeris strain LMG 27801 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 139819 32 100.0 35 ................................ CGGTCACCGGAGAGGAGCACGCTCCATGAAGTGCG 139752 32 100.0 35 ................................ GCTCTGGGGGCGGCCAAGCTTCTGGGGCTGACGCG 139685 32 100.0 36 ................................ ATCTGATATGGACCCGTCACGAGCAAGAATGCGCGG 139617 32 100.0 35 ................................ CAGTTCGGGCACTACATCGGTGCCATTGGCCTGGG 139550 32 100.0 35 ................................ TATGGTTCGCCTACGATTGCGTCGTTGGATACGTG 139483 32 100.0 34 ................................ TTGGCGAGTGTGGCATTTGCCGCGGGTCGACGGG 139417 32 100.0 35 ................................ AGATCGTCCGGAGGTACTGAGCCCCAGACCGGATG 139350 32 100.0 35 ................................ GGCTCCGAGCGGCAGCGATGACGTGCTCACATAGG 139283 32 100.0 34 ................................ TTCCAGCTTGGCGCGGTCATGGCCTCAACCTTCG 139217 32 100.0 35 ................................ TGCACACCTCAGCCGCTTACCCTAGGCGTGACTGG 139150 32 100.0 34 ................................ ACCAACGGCGACAATATGAATGTATCGCTGCCGC 139084 32 100.0 36 ................................ GATGACTGCTGGGATCGATGGTTTTCCATCTGGCAG 139016 32 100.0 35 ................................ TCCGCCGGCGGCTCCGGGTTGCGAAGCTCCGCCAG 138949 32 100.0 34 ................................ TACCGCATCGGGTTGGCGGGCGACGGCCGATAGA 138883 32 100.0 35 ................................ GTGTTCCGCACCGTCGAGGCCCTGGCGATCTGCGC 138816 32 100.0 35 ................................ GTCACGATTGCGGCCGATATAGGTGGCGGCCTGGT 138749 32 100.0 34 ................................ TCGGGCTACGGCGCGCAGGCCGGGTTCTCGGGCT 138683 32 100.0 34 ................................ GATGTCCTGCGGCGGAATATCGATGAGGTGGCAG 138617 32 100.0 35 ................................ CGATTTCGATCGTGGCGGGCAGCGTCAACTCGTGC 138550 32 100.0 33 ................................ ATGCCGTGGGCGACGTTCGAGCGGATCGCAGAC 138485 32 100.0 34 ................................ ATGAGCAAATCGCTCCAGGCTCTGGACGACACAC 138419 32 100.0 34 ................................ ATCTCGACAGACCGCTGATCGACGCGGCAATCGC 138353 32 100.0 34 ................................ GAGGGTGACGGTCGCAGCGCCGCCGCTCACGCGC 138287 32 96.9 35 .............A.................. CATTTCCCGTCAGGCATGCCTCGCCGGCCTTGGCG 138220 32 100.0 34 ................................ AGGCGCGGGTGCGCGTGCTGGGCGTGCATCGGGC 138154 32 96.9 34 ..........................T..... TGGTGGGACTTGCAGGACGAGGCGCTGGCTGCTG 138088 32 87.5 0 .....T.......T............T...G. | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.3 35 GTCGCCCCTCACGCGGGGGCGTGGATCGAAAC # Left flank : ATCCTGCCTTTGTCTGGAAGTGATCGATGCTGGTATTGATAACCTATGACGTGAATACGCAGGATGCGGCCGGGCGGGGCCGCCTTCGACGGATCGCGAAAGCCTGCCTTGATTTTGGACAGCGGGTGCAGAACTCGGTATTCGAGTGTGAAGTCGATCCGGCGCGCTGGGCGATGCTGAAAGCGAGCCTGATGGCAGAAATCGACCCGAGCAAGGATAGTCTGCGGTTTTACCAGTTGGGCGCATCGGGGAAACGCCGGGTGGAACATGTCGGGGCAAAGCCTGTGCTCAATCTGGACGGCCCTCTTTTATTCTGACGCCCGCGAACCGTTAGCTGTTGATCAAATGCCGGCAGGTTCGCGCAGGGCGTAACGTTATGGAATTTCTGCATTTTGAGTTTGCGGGAGGGATCTCTCGCGTTGGTAGCGGCATTGAGGCCGGGGCATTCGCGCTGGCCGCCCATTTTTATGTTTTTTCTCATCGTGTAATGCTGGCTGGGG # Right flank : TTGTAATCCTGCATGAAGGCGATCTGGTCGCGGGGGCTCGGGCAGGGCGTGAATTGAAGCGGGCCTGCCGGCCTACGCTTCCGGCAGGCCGGCCAGTTCGCGCCAGCCGGGTTCATCCAGTGTGTCGAGGCCGAGTTCGGCGGCTTTGCGGGCTTTGGAGCCGGCGTCGGTGCCCAGGACGACGAGGTCGGTCTTCTTTGACACGCTGTCGGTGACGCGGGCGCCGAGGCGTTCGGCGATCGCCTTGGCTTCGGGGCGGGTCATGGTGGTCAGCGTGCCGGTGAAGACGATGGTCTTGCCGGAGAGGGTGCCTTCGGTCTGGGGTTCTTCGTCCTCGATCGTCGTCAGCATGGCTGTCAGGTCGTCGAGGGTGGTGAGGTTGTGGGCTTCCAGGAAGAACGCTGCCAGTTCGTCGGCGATGGCGGTGCCGATGCCGGTGATCGAGCCCAGGGCGAGCCTTGCGTCGGAGCCGATGGTGGTGGCGGCCAGCATCTGTTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //