Array 1 3802175-3803485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057266.1 Escherichia fergusonii strain RHB31-C13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3802175 29 96.6 32 ........T.................... CCAAAGGGGTGGGGTGTGCTGTTCTGGCTCCA 3802236 29 100.0 32 ............................. GTCTGGGAGTGTCCATCGGGCAACTTCGCGCA 3802297 29 96.6 33 ............................T GTGGAGTATCAGTGCCTGGGTGGCAAGCAGTAA 3802359 29 100.0 32 ............................. CCGATCACATCATGTTTATTCGCGGTCGTATT 3802420 29 100.0 32 ............................. GGTCCAGGACGCTCTCAACGCCCTCGAAACTG 3802481 29 100.0 32 ............................. AGATGGAACGGTAATGGCTGCTTCTGTTGTAT 3802542 29 100.0 32 ............................. CGAGTTGTACCGCTGTTCGATCCTGCATATGT 3802603 29 100.0 32 ............................. GCCAGTAAACTTCACCCATGAATCCCAGATCA 3802664 29 100.0 32 ............................. TGTTGATTTAAATCAATTTCGTGAACAGTCGT 3802725 29 96.6 32 .................A........... CCGCCGCCGCGTCGCGTGAAACACAAAAAGCC 3802786 29 100.0 32 ............................. CTTTTTCAACGTGATCTATGTACACGATCCGG 3802847 29 96.6 32 ............................C CAACTCGCCCCAGACCGACACGGATGCTGGCC 3802908 29 100.0 32 ............................. CGATGGTTTGCGCGTCCAGCGTGGCGCGATAA 3802969 29 100.0 32 ............................. TGCAATAGCGATGATTTAATGTGCAAAAAGTG 3803030 29 100.0 32 ............................. ATTTATACGATGACGAATGGTCAGCCGGGTTT 3803091 29 100.0 32 ............................. ATGGACCGTGCCGCTTTTCGCCACCTGACGCC 3803152 29 100.0 32 ............................. CGGCCTCACGCGGATTCTTCCCCCGCCGGAAT 3803213 29 100.0 32 ............................. GCCAACTTCTGGTCGATGAAGTGCTGGAGTTC 3803274 29 96.6 32 ..................T.......... ACGCCAGCGGGTGGAAACTACTACCTTAATCT 3803335 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 3803396 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 3803457 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAATACTTCTACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCTCATCCTGGACTAATCATTATCATTCTCTACAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTACATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3818444-3819875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057266.1 Escherichia fergusonii strain RHB31-C13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3818444 29 100.0 32 ............................. CCGGGAGAGATTGGGTCGAAGGGCTGGACCCT 3818505 29 100.0 32 ............................. TCCGCTCAATATGAAAAAACGCTGGCTACAAC 3818566 29 100.0 32 ............................. GGAACAGAGTTAATACTTTCAATCTTGAAACC 3818627 29 100.0 32 ............................. ATGGTGAGAAAAAAGTGAAGTTGCGGGAAACG 3818688 29 100.0 32 ............................. GAATACCATTTATTTACATAGTATGCACACAA 3818749 29 100.0 32 ............................. CATCTATTTTGCATCGACACTTACTATGATGT 3818810 29 100.0 33 ............................. GGGAACGGGTGCAGACCACCTTTCTGACGGATG 3818872 29 100.0 32 ............................. ACCACTTTCACCGACAAAGAACTGATTAAAGA 3818933 29 100.0 32 ............................. CAGGATATGAAATAGCACCCACTTTGCGGGCA 3818994 29 100.0 32 ............................. GCTGATAGAAACCCTGATTTGCTGAATTGGGA 3819055 29 100.0 32 ............................. GTTTGCTCGAAATTGTTTCTGGCTGCTGTCTC 3819116 29 100.0 32 ............................. GCGCGGTCGCTACAATTATGGGCGTTGGCCGT 3819177 29 100.0 32 ............................. CAACGCCAGCCACGTTACCCGCTGGCGATTAG 3819238 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 3819299 29 100.0 32 ............................. ACGCGATGTGTGACCTTAAAATATTCACCTGG 3819360 29 100.0 32 ............................. TTAACCGTGGCTAACCCGCAACTTGCTGTTAA 3819421 29 100.0 32 ............................. CCGGTTATGCTTCGGCGGACGTAGCAAAGGTG 3819482 29 100.0 32 ............................. AAATCCGGTTCAACCAGCTCCACAACGGCACC 3819543 29 100.0 32 ............................. CCACTGAATATCAATCAATAGCTATTGGTGCG 3819604 29 100.0 32 ............................. AAACGTTGGTATAAGTCTTTATAGGGCGTCCG 3819665 29 100.0 32 ............................. AACAGGCGCTCGTTGACGTATACAGAGCATTA 3819726 29 100.0 32 ............................. CCTGGCCGCCGAGGTTATGAGCGCGCGGCAGA 3819787 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 3819848 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4559510-4559657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057266.1 Escherichia fergusonii strain RHB31-C13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4559510 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 4559570 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 4559630 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //