Array 1 236397-234446 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397071.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 236396 36 100.0 30 .................................... TATAAAACTGATGAGGTTGTAAGCCTGGGC 236330 36 100.0 30 .................................... AAGGACTTGCTTTGTACCCTACATTTATGT 236264 36 100.0 30 .................................... TGTTTGGCTCTATTAGTCTTTTTGCAATGT 236198 36 100.0 30 .................................... ATGTTTGTAAGCAATGACGTCGTTGAATAT 236132 36 100.0 30 .................................... TATGAAAAGTATGGTCAAGACATGATTGTA 236066 36 100.0 30 .................................... ACAAATGAATTTAAACAAATAAGAAAGACC 236000 36 100.0 30 .................................... GCTTGGTATTTATCCATTTACGCCGGACGA 235934 36 97.2 30 .............A...................... ATAGACCTGCTTTTGATGGTGAACCATGAG 235868 36 100.0 30 .................................... TTTTTGGTTTTTTAGATCTTGATTTCGTAA 235802 36 100.0 30 .................................... ATATCTAAACTCTAACATTTAACCTCCTTA 235736 36 100.0 30 .................................... CTTTGCAAGTTCGTATTGTTCATAACAAGG 235670 36 100.0 30 .................................... TATTTTCATTGCTATTAAAATATGAAATTC 235604 36 100.0 31 .................................... CCGTCATTCGATTTATAATCGCCGTTAATAT 235537 36 100.0 30 .................................... TATTGCACCAGGCTTTACCTATAAGAATTA 235471 36 100.0 30 .................................... TTAAAGATACAACTAATGCAATTAAAAGGG 235405 36 100.0 30 .................................... AGATATTTCTTCCTCCATTCCCTGACCTAC 235339 36 100.0 30 .................................... AAAATAAAACGAGTCGAGATACTGACGAGG 235273 36 100.0 30 .................................... AAAGCATGGAAAGAAGTGGACAATGCACTT 235207 36 100.0 30 .................................... AAAAATAAATGTATATTAGTCTCAATTATA 235141 36 100.0 30 .................................... TTAAAGATACAACTAATGCAATTAAAAGGG 235075 36 100.0 30 .................................... AAAGAAAGAGAGGATAAATAAATGATTAAA 235009 36 100.0 30 .................................... GCATACAGGAGAGAATACGCAAGAGACCTT 234943 36 100.0 30 .................................... TCTAAACTTTGTCAAATCCGACTGGTTCGA 234877 36 100.0 30 .................................... AGCTATATCAGGGTTATAGTTCGAATCTTC 234811 36 100.0 30 .................................... TCTTTTTCTTTTATCCAGCCTTTAACCTCT 234745 36 100.0 30 .................................... TATGGTTACAAGGTCTTTGTTTAAGTCCTC 234679 36 100.0 30 .................................... TGTTTTGCAGAATCTGTGTAATCATTGGTT 234613 36 100.0 30 .................................... ATTAATAAGATTGAGTACTACCTAGGGAAC 234547 36 100.0 30 .................................... ACCAGGAAGCACAACACGCATAAAAGCAGC 234481 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.8 30 GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC # Left flank : TAACTTAGAAGCAAACTCTGCAAACATACTTAAAAAAATGTATTCTGAATTAGAAGAAGACTTAAACACTCAGGAAGTATACACAAAAAAGGTGGAACTAGAAAGTATAATAGCAAACATAACAGACGAACTAATATATAGATCTAGATTTTCATTAAAAGCAGGAGGAATAAACTACCAAAATCTATTCAAAGCCATAGAAATAGAATTTGACTATGAAAAGAACTCAGTATTAGAAAGACTAATAGAATATATAAAAGTAACATCAGAACTACTAAAAACAAAAGTATATATAATAGTAAACCTAGATAGCTTTCTATCAGAAGAAGAGCTAGTTGAATTAGAAAAATTTTTACTATACAATGATATTAAAGTTTTAGCCCTACAAAACGCAATCAGAAGGGAAGTCATACCTTCTGAAAACTTAAGAATAGTAGATAAAGACCTATGTGAAATATAGAAACGTCAAATCTAAATAACTCTCAGATTTCGAATTTGAG # Right flank : ATAAGTATCCATTAGATAGATTAAAATAAAAACATAAAGTTGGTAAAACCTTATAAATCACCTTGCTAAAGAGGGTGATAAAGATGAATAGCAACAAAAAAATACTTGAATTGATAACAAGTATTTTCACGCTAATAGCTGCAATTATTAGCTTAATAGTAGTCATCATTCAAGTATTAACCTAATGGAACAGAGGTGAAAGCCTCTTCCCAATGCTATTTATATACATTATAACTCAGAAAGGGAGTGATTACAATAAAAGAATACAAAACAAGTCCTGAGCAACTCGCTAAGAATAGGGAATATAAACGTAAAAATAAAGAGAGATTAAAAATACAGACTTACAGAAGTAATGGAATTTTATTCATCAAAGAGTACGCTCAACTTGAAGACCTAAATGAATTTAAAAGAATTATTGAAGATAGGGAAGATGAACTAAAAAATAGCTGATGATTTTATGATTATTATTATTTCGTGAGTTATTGTAAATTTTATATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1691068-1693353 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397071.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1691068 28 100.0 33 ............................ TTGGTTTACTGGACTTAGAGTCCTATTTTCTTG 1691129 28 100.0 33 ............................ TCATTGACATTCAGTAATTGACCTAAATATTTA 1691190 28 100.0 33 ............................ TAATGATATACACACATCTTCCCTATTCGGAGA 1691251 28 100.0 33 ............................ CGAAGAAGTAATCATGTCCTACTGGGTAGACGC 1691312 28 100.0 33 ............................ TCAGAACTTGCTATTCTTAAATCCGATGGTCAG 1691373 28 100.0 33 ............................ TTAACATTCGCCACCTCTATTCTTCTTCGCCAG 1691434 28 100.0 33 ............................ TCCCATCATACGCAGTACCAGAAGATACGCTAG 1691495 28 100.0 33 ............................ TTGGTTTACTGGACTTAGAGTCCTATTTTCTTG 1691556 28 100.0 33 ............................ TCCATTTCGGTTTCCCAACCGCAAGCAAATGGA 1691617 28 100.0 33 ............................ GTACACTTTCTTGATTGACTCATTAAGTCCGTA 1691678 28 100.0 33 ............................ CTAATACGTAGATCGTCTTAAAGTTCGAGTGGT 1691739 28 100.0 33 ............................ CTTCGACGCTACGGGCAAAATTTGTCCAGGTAG 1691800 28 100.0 33 ............................ GTACACTTTCTTGATTGACTCATTAAGTCCGTA 1691861 28 100.0 33 ............................ GCTAGTTTCTTGACTACGTGTTCTATTGAAGCG 1691922 28 100.0 33 ............................ TACCCGTTAAATCATATCCTGGTTTAATCGTCA 1691983 28 100.0 33 ............................ CTATAGCTGCATAATATCAATGCTTTGAGGGTG 1692044 28 100.0 33 ............................ CTTCATTTGGTTTACTGGACTTATTTGTCTTTG 1692105 28 100.0 33 ............................ CTGCTACTTCAAATGGTTGACACATTTCAGCTA 1692166 28 100.0 33 ............................ TGGGCTATAAATACGAAATCAATGACCCAGACA 1692227 28 100.0 33 ............................ GGACCGAAAGAGTATCTTTTCAAACAATAGGGA 1692288 28 100.0 33 ............................ CTAATTCCAAGCACCAAACCTCTAATCTCTTCA 1692349 28 100.0 33 ............................ ATTTTTTTCACCTCTTCATGATTTCAATACCAG 1692410 28 100.0 33 ............................ TGGGGCTTGTAAGTGTACGTCATGCGACGCATA 1692471 28 100.0 33 ............................ CATTAAGTAAAGTAGAAAAAAATGCCAGATTTA 1692532 28 100.0 33 ............................ TTGACGCTTCGAAATTCGAAAAGCTACCCCCTA 1692593 28 100.0 33 ............................ AAAAGCCTTGTAATCTCTCTAGTCCAAAGTGCG 1692654 28 100.0 33 ............................ TATTCTTGTAGTTGCTGCCTGTGGCGGTAGTCG 1692715 28 100.0 33 ............................ TTGGAAATCTTCTTGAATTTTCCGTCATTGTTA 1692776 28 100.0 33 ............................ TCTAAAAAGTAGTAGAATCTGTCTTTTCCTTTG 1692837 28 100.0 33 ............................ TCAATTTCAAACTCTGGGTCATAATCCAGCAAG 1692898 28 100.0 34 ............................ TGACAATGATTGGTTTATAAGAAGTATTGCAAGG 1692960 28 100.0 33 ............................ TAGTAAATTCTTCATTTGATTTACTGGACTTGG 1693021 28 100.0 33 ............................ TGTCCCAAAGTAACCAGGAATAGGCATCAAATA 1693082 28 100.0 33 ............................ TCCATATTTCTTTATAAATCTTCTTTAGAATGA 1693143 28 100.0 33 ............................ TAAATCGTGGTAAATATCCGTATATCTTATCTA 1693204 28 100.0 33 ............................ TTGAAATAGTTAGCTATCAGTTCTGCGGTCTTA 1693265 28 100.0 33 ............................ TCCAGCGTTTAAAGCTTTATACTGTCCACTTCG 1693326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 33 GGATCACCCCTGCGTGTGCAGGAACATT # Left flank : TAAATTTGTATTTAATTTATATAAAAAATTGCCGATAAATCCCATTTTGTCAGAAAAAATACTCACAAATGACATAAGTCCAATGAATATAAGAACTGCTCCTACAATTTCCGGCCTTATAGTTTTTGGTTTAGATTTAGTTTTTGCTCTTCTCTTTTTCAAAATTACACCTCAAGTAAATTATAACATATTTATGGCTTATTTTTCTTATAAATACCTTAGAACAAATCGTCTTTTTTATTAAGATATGTATATTTAATTCATTATTTTAATTAAGCAAAAAATAAAAAGAGTTTTAAATTACAACTAATTTATATAATATGAAAGTTAAAAAAAATATGAATGTTGATTTATTAAAATTAGATGTTGATTTATTAAAATTAGATATTAATTTATTAATAAGTAAATATTTTTAAATATATTATAGTCTAATTAAATTAAGGTTACATTGTCTATGTAGGAAACTTGTTCATAATAAAATCCGCAACAGATTATGTCTA # Right flank : TACTTAAATTTCCTCTAATTTTCAAGGTTTTCTTTTTGAAAATTCTTGAAATTTTTGCACTTTCTCTGAAAGTTCATATATTAATTTTGAATCTTCGAGTGCTCGATGAGGAACTTTTTTATCGATCCCATATTCTTTTAATACTGTTTCTAGTTTATAATTTTCTAAAAAGCTTTTTTCTCTTTTTACAAAATCCATTAGATCCCATGTTTTGTTTGTCAGTACGTCTAACCCATTTAACTTTAATTTTCTATTTATAAATTTTATATCAAATTTTATCCCGTAACCTACTAAATCTTCTAATCCTATAAATTCTTTCAGTTCTTTTAAGATTTCTTTTATGTTTTCTCCAGATTCCAATTCTTTGTCCGTTATTCCTGTTAATTCTATTATATTTTTAGGTAGTTTGGTATCTATTTTAACTATTTTGTGAAATTCTTCCTTTGAATCACTTTTGATAGCTCCTATTTCTATTATTTTATTTGTCTTTTCATCTAGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCTGCGTGTGCAGGAACATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //