Array 1 1536276-1535881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018193.1 Granulibacter bethesdensis strain NIH7.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1536275 29 100.0 32 ............................. ACTGATCTGATGCCACATCAAAGGGAGGCTGT 1536214 29 100.0 32 ............................. ACGCGCCTGACAGGGCTGTCGCGAAGCGGGTC 1536153 29 100.0 32 ............................. GCGACAGTTTTGTGTCCGCTGTGCGTTGACAT 1536092 29 100.0 32 ............................. AATATTATATGAACAGGCTAAAGAGGAAATAT 1536031 29 100.0 32 ............................. GTGTTTTCACCGAAAGATTGCAGCTCATTGAA 1535970 29 96.6 32 .................T........... GCATCGAGATGCGTGTCACTAATGCTTTACTT 1535909 29 93.1 0 ......................G.....C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCCGCTGCGGACATTCCCCGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGAGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCTCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTCGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : GCGGCACATCTGCACCGAGCGCCAGAGGAGCCGTGTTCCCCGCCTGTCAGCGAAGGCCGGATGAGTGACCACAAGGTCGGCAATCTCTTCGTCAAACTCAAGGATTGGCGGCGTATCAGAACTCGTTACGACAGATGCGCACATACTTTCTTCTCAAGCATATTCATCGCAGCAGCAGTCATGTTCTGGCTATGATTTAATGAGTCCTGAGCCTAGACAGGTGGTGTAGAGAATACCCATCTTCATTGCTGTTTTCTTGATCCAATTCGGTCAGCACGTACGCCAAAGAAGCCGATCTTTGCAGCGGTCAAGATCATGGCCGTTCCGCAAGATGCATGCTTGATAGTATGCTCCCAAACCAGCTTTCTGTGGCCTGCCCAGCTGCCAATCGATCTCCTTAAACTCTTGCTGAAGGGCCTCCCCCCACAGTCTTTGTGTGGAATGAGGACCATAAATTCTAATATACAAAATATAATATATATATTATATAATATGTTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1545498-1545221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018193.1 Granulibacter bethesdensis strain NIH7.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1545497 28 100.0 33 ............................ AGGATCTGGCGGAGCTGGTGCAGAACGGCACGA 1545436 28 100.0 33 ............................ TCTGGTGGTGCAGAAGGTGCTGCTGCTGGCGCC 1545375 28 100.0 33 ............................ CGAGTTGTAGTTCTTCCAGAGCCTCAGTGTCTC 1545314 28 100.0 33 ............................ TGTTCACTCTGACACCACCGACGAGCGTATTGC 1545253 28 96.4 0 .........................G.. | GCGGA [1545231] ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGATGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGATATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAACATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGCCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCCGATCAGCTTTCGGAGAAAGGTCTGCTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTGTTATATTGCCGTAATTTTTACCTATCCATGAGATTAAACATCTCCGGACAGTTAAGTTGATGGAGCTGCGCAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGCCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1854970-1854210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018193.1 Granulibacter bethesdensis strain NIH7.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1854969 28 100.0 33 ............................ GCAATAGTTGCGCGTGCGTGAGATAGCGCGACG 1854908 28 100.0 33 ............................ TATTTTTGCCGCCGAGACGATGGAGACCGGCCG 1854847 28 100.0 33 ............................ GCGCTATACCATCAGGCGGGGTTAATATGCCTT 1854786 28 100.0 33 ............................ CCGACCAGTCTGGGCGCTCGTCTCCCGGCTCAG 1854725 28 100.0 33 ............................ CAGATTTTTTTTCCGTGGCTCTCTCGTGCCACC 1854664 28 100.0 33 ............................ CCATCGCCCATCGGGATGTCGATGCGGATCATC 1854603 28 100.0 33 ............................ GATGGCGTAGATTTTTTCGCTCATCCGCACGCC 1854542 28 100.0 33 ............................ TGCAGTCGTCGTCGCGGCGACCGTGGTGCCGCA 1854481 28 100.0 33 ............................ GGTGTCCACGCAGATTTTGTGCAGCGCTGGATT 1854420 28 100.0 33 ............................ CAAAGTAAAATCTTCTCCTATCGCGCCGACACT 1854359 28 100.0 33 ............................ TATTGGACCCAGAATGACGAGCTAAAGATCAAG 1854298 28 96.4 33 ...........T................ GCGCATATATATAAAATTGGCTCGCTATGAGCG 1854237 28 92.9 0 ...........A...A............ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ATAAGAATTGCTGCGTCCTGCCTGATGTTTGAAGGGCAATACTTTTTTTGGTCCGGCTTTCAAGATATCAGGCTGCTGTCGGCAATAAGAAGGACCAGGTCTTTCTGCACCAAAAACGATTTTGGTGTCGGGCTTGATGGCACAGGTTATTGAATGGATCCTTGCGCACCCAGCGCTTCATCCGGGTTTTGTCCCATCAATGCTTGCCAAGCATGTTCTGGATGTTCCGCAAACAGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCTTTTTTAATCCTGCACCCGTTGCGGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGAGGCAGGGTTGGTATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGACATTATCGATGCCGGTGGAGTACTGCTGCTTCAGAGAAGTTAATTTCTGAAACATTATGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : TTACGCATCGTCAGGGATCGCTACTCTCCCGCCGGGGCTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCCATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGACCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGGCAGACCGTCTCCATGCAGCAACTGGTACTGATCGTCATCAGGGAGTTGCAGGAGCGTATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 1945430-1946190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018193.1 Granulibacter bethesdensis strain NIH7.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1945430 28 100.0 33 ............................ GAACGATTCCGGGACGGATCATCCTCCCGAGGA 1945491 28 100.0 34 ............................ TGACGCATGGGAGAAAAATTACGCCGCACTGCGT 1945553 28 100.0 33 ............................ GCCTTGAGGATGCAGTCATTGTATATCATCGGA 1945614 28 100.0 33 ............................ CCGGCAGCCCCCACAAGGTCGGCGCGATCGTGC 1945675 28 100.0 33 ............................ TGGAGTGCAGTCCATTTCTGTCGATGGGACACC 1945736 28 100.0 33 ............................ TTGACGGGATTGTCGCCGGAGTGATGTGTGTGG 1945797 28 100.0 33 ............................ CGGCAGGCGCTGGCGGCACAGGCCGTATGGTCG 1945858 28 100.0 33 ............................ CTGTTGATTGTCTCATAAATGCATCTGCCGCAG 1945919 28 100.0 33 ............................ CTCCAACCTTTTGAGCTGCCTTGCTCAAAACAC 1945980 28 100.0 33 ............................ GCTGTGCGGGGGGCGTCCGTCCGCGTCCGTGAC 1946041 28 100.0 33 ............................ GTCGGGAAAGTGAGTCTTTATCTGGCCCAGCCG 1946102 28 100.0 33 ............................ CTCAGGGCCGGAGAAATCATCAATATAGTCCAT 1946163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGTCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAACGCTCCGTCATTCCGAAAATGATCGAGCGACTCAAACAACTTTTCGAAAAAGAAACGGAGGCCATCCCATTTCTCGAGGATGATGAATGATGCCAGCCACTCTGGTCATTACAAGAGATGTGGAAGCACGCTATCGCGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCCCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCTATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACTCTTGGCGACGCTCCCAAGGAGATTGTCGATGCCGACGGGGTGCTGCTCGTTCGGAAAAATTAAGCTTTGAAACATACCGTTCTTTAATATTGTCAATAAGTATCAATGTGTTATAGGTAAGG # Right flank : CGCCATTGTGGATAAGGGCGCAGATCATGTGGCCACCCACAGCGCAAAGGTTGTCACCGAGCAGATAGGAGCGATGTCCACAGAGTTAAGGGACATGATCGCAGCTGCCTTACAGCTTCAAAAAGACATGGCCAGCTCTATCGCCCCAATGGCAGCACAGAGTCGCATAAATATGATTTGGTCGTGGTGGGGAGCGTTTGCCTCCATCATGATTGGCGGCCTTTTTTTTGGCATGAACCTTGCGAAATTCTTGTGAGAATAGCAGAAAAAATGCCTTGTATCTCGTAACGCTACAAGATACAATCTTACCATGATAAACAGTTTTAGACCCAAAGGGCTTGAAGGCTTCTTTCGCACAGGATCGATGGGGGGCATTCAAACGGCTCACGCAAAGAAATTGCGGCATATTCTCGGTCTGCTCGATGTGTCAGAAAAGCCGCAGGACATGGCTCTCCCCGGCTTTCGGCTGCATAGCCTGAGTGGTGATCTACAAGATCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //