Array 1 186393-183374 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912425.1 Halomonas sp. 23_GOM-1509m N557DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186392 29 100.0 32 ............................. GCCATTTTGGCGAGTTCGTGCGCGGGCTAGAG 186331 29 100.0 32 ............................. TGCGCATGGCTTCCTTACTTTTAATCTGATCA 186270 29 100.0 32 ............................. CCCGTTTCAGCAACAACGGCATCATTTAAAAG 186209 29 100.0 32 ............................. AATTAACCGCCGCTAGTGTCGAAATGGATAAT 186148 29 100.0 32 ............................. ATGATGGCCATTGGCGCCGGTTGTGGGTGTCG 186087 29 100.0 32 ............................. TTAGGAACGGCTTGCTCCAGGCTTACCCAAAA 186026 29 100.0 32 ............................. ACGGTCAGTGTCAGACTGATTGTGTCATCGAG 185965 29 100.0 32 ............................. TTAGGGCGGCTAATTATCGTGAGCCGTTCGCC 185904 29 100.0 33 ............................. CGGTTATTGATCACCGTTTGCAGCTGCTCGGCT 185842 29 100.0 32 ............................. CGCACCCTAAGCGGGTGTTTAGGGTCGCGCAA 185781 29 100.0 32 ............................. TTTCGTTTTGCGTGGGCAGGTTCGCCCACTGA 185720 29 100.0 32 ............................. CTCAAGCACGGCTCATGCACTCACTGCGCGGG 185659 29 100.0 32 ............................. TCCTGAACCTGCAGCGTGCGGTCTTCGCACTT 185598 29 100.0 32 ............................. ACATGCTACTGCGACGGCTACCACTTCCCCCA 185537 29 100.0 32 ............................. ACTTCGATGCAGCACAAAAGCTCAATTACACG 185476 29 100.0 32 ............................. ATCTACGTCAACGTTAGGCTTGAGCATTAGCG 185415 29 100.0 32 ............................. CTTGGTGCTGGACTCAACACTGGTACCGCCCA 185354 29 100.0 32 ............................. CTAAATATAACGCCATCGCAAAAGACATGCGG 185293 29 100.0 32 ............................. CAGCACGAGGGCGTCGTCGGTCTTGTCTTCGC 185232 29 100.0 32 ............................. ATGCGTTAACCACACTGAGTAGCTATGAACCC 185171 29 100.0 32 ............................. GCTAATAGTCTGCGCGGCATGGTCATAAACCC 185110 29 100.0 32 ............................. GTGCCCGGCGATGGGGCTGTGCTTTGCAGCTG 185049 29 100.0 32 ............................. GCACGTTAGCGCTTCAGCGTGAGCGCGAGCTA 184988 29 100.0 32 ............................. GCTTGGACGATGGCCGCATCCCCGGCCAGAAG 184927 29 100.0 32 ............................. GTTTGCTACATCGTCGATAACCAGACCGTCGC 184866 29 100.0 32 ............................. AGTTCGGCAAGAATTCTGCTGAGTACAAATTC 184805 29 100.0 32 ............................. CAACCTGCGTCTTATCTGCGGCGTAGTAGTGA 184744 29 100.0 32 ............................. CCGGAGGATGTATGACAGATCAGGAATTGTTA 184683 29 100.0 32 ............................. GCGCAATCACGATGCTGATGGCTGCATGTGGG 184622 29 100.0 32 ............................. CTAGATAACAAATTTGGCGCGCTCTCGGACAA 184561 29 100.0 32 ............................. TTGACCAGCGCCGTGATGGGCTTAATGACCGT 184500 29 100.0 32 ............................. GAATAACGAACCACCATTTCGCACGCCGCCAC 184439 29 100.0 32 ............................. GTGTTTGGCAAGCGGAAGGCCGATCAGATGAC 184378 29 100.0 32 ............................. TATGGATATCGCTTTGTTCTTCTTCGAGTTCG 184317 29 100.0 32 ............................. GACATAGGTCTGCCAGTTTCATCGGTTAGCAA 184256 29 100.0 32 ............................. TCCTGATCGGAGTTGACGTCCGCATTATCGCT 184195 29 100.0 32 ............................. TTGGGCGACCAAATGCCTCTTGGCCCCTCCAT 184134 29 100.0 32 ............................. GGTACTCGCGATGTCTCGTTAGTAATTCGCGC 184073 29 96.6 32 ....C........................ CCAGCTTTTTACAGAGAACGTTGAAAGCATCC 184012 29 100.0 32 ............................. TCGTAAATAGCTTCTCTGACTGTTGATATCCG 183951 29 100.0 32 ............................. GCGCCGGTGTTGGTCAGTGCACTCTTAATTTG 183890 29 100.0 32 ............................. CACTGGAGACAGATTGGCGCATTGCTGAGCGC 183829 29 100.0 32 ............................. ATTACGCCACCAAAGCCCCATGGAAGCTTGGG 183768 29 96.6 32 .........................G... CCTGACGGCTACGCCGACGACAAGATGCGTCG 183707 29 100.0 32 ............................. GTGATTGAGAAGTCGCGCCGTATCGGCCTTTC 183646 29 100.0 32 ............................. AATTATTATGGCTGCAGTGTTCACCACAATAT 183585 29 100.0 32 ............................. CCTCCTTTCAAGTCAAGGTTGGTACGTACCGT 183524 29 100.0 32 ............................. ATCTGAACGGCGTCCCAGTTTTCGGGCAGTAC 183463 29 100.0 32 ............................. TCGTCGTTATCGTCATTTCCCCCGGTGCGTAG 183402 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.8 32 CCGATCCCCGCACGGGCGGGGATGAACCG # Left flank : CCCCGATCCCCGCACGGGCGGGGATGAACCGTTCAGCGTCCGCAGCGACCACCACTCTATTAACCGATCCCCGCACGGGCGGGGATGAACCGCCAGCCACAGCCGAAAACATCGCCAACTATCACCGATCCCCGCACGGGCGGGGATGAACCGCATTCGCCCCTCAATCGAGGGGCTTTTTATTGCCGATCCCCGCACGGGCGGGGATGAACCGAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGACCGATCCCCGCACGGGCGGGGATGAACCGCTCCTTACTTGTCCACTTTCCAACTTCCTTAT # Right flank : TTCAAAGTGGCGTCAAAAAGATCATTTAGATGGTCGGGAGTTAGATTTAAAGTATGTGCCCTTGGCCGCTGCGCGGTGCTTTCGCGCCGGGCCGCCGTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATGTGCATGCCCCGGAATAGGTGGCAGAAGGTGTTGCCATATAGGCCGCTCATAAAGCATCGCCAGCGGCCAAGGCTTATTAAACTGTGTGCTCGTGGCACCGCTGCGCTTGAGGCTTATCACGCCTACTCGAAATGTGCATGAACCGTCATAAGTGGCGAGCATTGAGTCCTTCTGCCGGTTTCTGGTTGGCTAACTGCTATTAATGGCAAAGCCTACTTAGTTTTTGTGCGGCGTTGAGATATACTTATTTAGCTAGACGTCAAATTAAGCTATATCACTAACGTTAAAAGACATGGATCTTTCCCGCATGGACACTCATCACTTAGCGTCTGAACCGAAAAGCGTGGCCGCTCGTCAAGAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188356-186740 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912425.1 Halomonas sp. 23_GOM-1509m N557DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188355 29 100.0 32 ............................. ACCTTCTAGATGGGGCATCATTTTTGCCGAGT 188294 29 100.0 32 ............................. GACAAGACGCCCTAACGACCTATCTTCAGGAA 188233 29 100.0 32 ............................. CGTGTGCATTAATGTCTCTGCCGACGCCACAC 188172 29 100.0 32 ............................. TGTCGACCCGAGGTGGCAACGCATGCGTTTAG 188111 29 100.0 32 ............................. CCGACGGATTTACAATGATGTTTAGCCCTAAG 188050 29 100.0 32 ............................. ACTGAGAGAGGAAGTCAAAGTTGTGCCAGAAA 187989 29 100.0 32 ............................. GCAACAATGTCCGTTTCGCCTACCGCGCCCCG 187928 29 100.0 32 ............................. CAGAGCAGCTACGCGTTGAGGAAGACGAAGCC 187867 29 100.0 32 ............................. TCACGCTCGCCGCGCTCCCATAGGTTCATCAA 187806 29 100.0 32 ............................. AGTGACCGTATCGGTCGCTGCTGCCGTTTCCC 187745 29 100.0 32 ............................. CTGCATGCCCCTGCTTGCTCATTCGCCCTTCT 187684 29 100.0 32 ............................. TCGGTCGCGGCTTGTTGCGCAGCATCAGCGGG 187623 29 100.0 32 ............................. TTGGCGAAAGATTAGCTGCTGCGTCAGCACCA 187562 29 100.0 32 ............................. CATCCAGATTGGCCGCCTACGCTGCCGCAATT 187501 29 100.0 32 ............................. CTGCCCAATCGGCGCCAGATAACCCGGGTCAA 187440 29 100.0 32 ............................. TAGGCCAAAGCAACGAGGCTAGCATCATGGGA 187379 29 100.0 32 ............................. GCGATTTTTACCTAATGGCCAATGCCCTGGCG 187318 29 100.0 32 ............................. TGGCTGGCGGCGCCGCTTACGGTGGCTGGGCG 187257 29 100.0 32 ............................. TAATCAATTAGCTCTTGGGCATTGCTTGATAA 187196 29 100.0 32 ............................. CTGCTGCCCCTACAAGGCTGCACAAGGCCAAG 187135 29 100.0 33 ............................. CATTACCACCAGCTATCTGGCGGCTAGCCCGAC 187073 29 100.0 32 ............................. CGCTGCCGGGGCAGATTAGTGCCGAAGAGTAT 187012 29 100.0 32 ............................. CGGACGCGATTACCGAGCGCGACCGGCTCTTA 186951 29 100.0 32 ............................. TTGGTGCTTTCAGAGTCTGAGAAATTACCGCC 186890 29 100.0 32 ............................. TTCAGCGTCCGCAGCGACCACCACTCTATTAA 186829 29 100.0 32 ............................. CCAGCCACAGCCGAAAACATCGCCAACTATCA 186768 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 CCGATCCCCGCACGGGCGGGGATGAACCG # Left flank : GGCGATATTCAGCCGCCACCGCCAGCACCCGATGCGGTGCCGCCTGCGATTCCCGAACCACCTTCGGTTGGCGATGCTGGGCACAGGAGCGGATAAATGGCGATGCTCGTAGTGATTACAGAAGCCGTGCCGCCACGTCTGCGTGGCAGGTTGGCGGTATGGCTCTTGGAGATTCGAGCCGGTGTTTACGTTGGTGACGTTAGCAGGCGCATCCGCGAAATGATCTGGGAGCAGGTAGAAGCGTTAGCTGAAGATGGCAACGTAGCAATGGCCTGGGCCAGCAATCATGAATCCGGCTTTGAATTTCAAACCTATGGTGAAAACCGCCGAGAACCCGTCGACCATGACGGGCTACGCTTGGTGCGCTTTGTACCACCACAAGTTAACTAGCTGATTTTATTTGATCTTTAATAATTTAGCCTGATTAAAAAGTAAGCAAAATAGCTGGTAGATTTTTTATCTGCTATTTTCTTCTTGTAGATCAATTATCTACAACTAGT # Right flank : CATTCGCCCCTCAATCGAGGGGCTTTTTATTGCCGATCCCCGCACGGGCGGGGATGAACCGAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGACCGATCCCCGCACGGGCGGGGATGAACCGCTCCTTACTTGTCCACTTTCCAACTTCCTTATCCGATCCCCGCACGGGCGGGGATGAACCGGCCATTTTGGCGAGTTCGTGCGCGGGCTAGAGCCGATCCCCGCACGGGCGGGGATGAACCGTGCGCATGGCTTCCTTACTTTTAATCTGATCACCGATCCCCGCACGGGCGGGGATGAACCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //