Array 1 4141-4349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHN01000057.1 Gilliamella apicola strain Nev3-1 Gilliamella_apicola_Nev3-1_contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4141 28 100.0 32 ............................ ACTTTATGATGATAGATTAATTAAGATCTTGA 4201 28 100.0 32 ............................ GCCAGCAAATTCAAATTGCCAGTTAAAATAAC 4261 28 100.0 33 ............................ TACACGGCGGTAAACTAGAAACGAATATACTAT 4322 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTTAACGCCGTGTAGGCGGTTTAAATG # Left flank : ATTTGTTATGAATGATTTTTTGATTTGAATGAGTGATGTGAAAATCACTGTAATGATGTATAATTAGTGCGTCTAAGTTCCAATCTAAGCCCTCGATTATTTCACGGTATAGAGGGTTTGTTTTATAAAATACGTAAAAATTTTTGGTCGGTATTTTTGACGGTATTTAAAATAAGTTAATGTTAAATATTTATATTGTTCAATTAGTTGATTTTTGTTTTCGATTCCTGCTGGGGTCAAAGCCCGCCGAAACTGGCACGGTTTTACATTGATATTCGCAATAAACTTTGATGCTCACTATAAATCAATTATAGTAAATTTTGTTGTATAGTAAAAATTACGCCTTATCAAATTATCTAAAGCTTTATCCCCCCTTTTTTTGAGCTGTAAAATAAAACAAATAAAAACATTGTGTTAGTGATTTTTTGCAAAAAGGGTTTTTAGAGGCAAAAATCCTATTTGCCTTTTGGCAAACAAAGTTTATAGTATGTTTGTTTCTA # Right flank : ATTTTTCTTTATTGTTATATAGATCATGCCTGCCACTAATATATAGTCGTATTTCGCTAATTAAAAATTAAATAAAATCAATGGGTTTTCTGAAAGATTTTTATATTTATTTTTGTTAGTTAACTCACATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAATGTGCCTTATGTTGCTTTTTATCTATAAAAGCAATATTTTTTTATTAAAAATTTTATACAGAAAGTTAAAATAGTCAGTAGAAAGTTATTACGTATTTTTGAAAAAAGCTTTTAATTAAATTTGATGATAGAGGTGGAATTTTTATTAGTATGATTTTATACCATTAAAACAACATAAAGTCAATTTTATACAATATGTTATGCTGTTTTAATGGGACATATTTAATATAATGCGTAAAAATAGCAATTTTGAGTGGCTTAATTACCTATTGCTGTATTACCTATATTATTTATCAC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACGCCGTGTAGGCGGTTTAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 66396-65939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHN01000044.1 Gilliamella apicola strain Nev3-1 Gilliamella_apicola_Nev3-1_contig49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66395 29 100.0 32 ............................. CCTTTATCCCTCACGAAGTGGGGGCGGTGTGT 66334 29 100.0 32 ............................. TTATAGGCTCATTCCCCGACTACGTCTATGTG 66272 29 96.6 2 ............................A GT Deletion [66242] 66273 29 96.6 32 ............................A AATAGCGTTAGCACGTAACCGAGCCATCAATC 66212 29 100.0 32 ............................. TATTTATAAAAATACCAATAAGAAATGTAGAT 66151 29 93.1 33 ............G...........A.... ATTTCGATGTTATCCCCGTTCATGATGGCGAAA 66089 29 93.1 32 ............G...........A.... AACGCTATCAAACAGCACGAGAGCGACTTAAT 66028 29 93.1 32 ............G...........A.... TTGAGAAATTAACTCAGAAAGCCTCTGAAGCT 65967 29 69.0 0 .......T....CCC....A.G..A.G.T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 93.5 28 GTGTTCCCTGTATGTACAGGGATATACCG # Left flank : CTTATTGAAGAAGTTTTATCAGCCGGTGGCATTGAACCACCGCCACCTCCAGACAATGTTCAACCCCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGAGTCGCTAATAATGAGCATGTGTGTTGTTGTAACTGAAAATGTTCCGGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCTGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTATTAAATTTGCAGAAGACGGTAATGTTGTCCTTGCTTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACAAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATTTTCTTTAAAAATTAGAAAAATTTGGTAGGATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : GTATTTGTTATATGTTTCATTTATTTTATAGAAATTTAAATAAAATAAAAACTTCAATAAAATCAATGGTTTTTCTGAATGATTTTTATTTCTACATTAAATATCTATAGGTTGGTTGTTATTGTATTAATTATAAGTTTAATATTCTCTTTATTATAAATAGCTTACAATTAACGGAAAGTTTAACAATATAGTTGTTATTATAATATTTACTGTAAAACTAAAAGAAATTATTAATAATGCTGTCTAAAATAATTAGCAAAAATGGCGTACAATATAATGGCATATAAATATTATAAATAATTTAGGAAATTAGTATGACAGGCAAATTTATTGCCATTGAAGGGCTTGAAGGGGCTGGTAAAACAACGGCTATTAATACTGTTGCTCGCATTTTGAATCAACACGATATTGGTGATTTGCAATTTACACGTGAGCCAGGTGGAACGCCGATAGCTGAAGCTTTACGTAATATTATTAAAAATGGTTTAGATAATGAG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGTACAGGGATATACCG # Alternate repeat : GTGTTCCCTGTAGGTACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //