Array 1 176188-173192 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUO01000012.1 Kineothrix alysoides strain DSM 100556 Ga0244723_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 176187 28 100.0 33 ............................ CTGTCGCAATACTCTTCTTAAGTGTTTCCTGCG 176126 28 100.0 33 ............................ TACACCCTATTACTTGCATGGATGTACCAAAAT 176065 28 100.0 33 ............................ CATCCATGAGCAGAGAAAAACTTTTAAGGGAAA 176004 28 100.0 33 ............................ CAGTTGGATACTAACTCTAAAATGGTTATAGAG 175943 28 100.0 33 ............................ CATGATCGCATTCGGTGTTTACTCGGACGTAGC 175882 28 100.0 33 ............................ TGAAACAAATTTACCTGAAGAAGATGTATTGAA 175821 28 100.0 33 ............................ CCAAGGCTTTACATGCTCGTTGTACCATTTATA 175760 28 100.0 33 ............................ TACTGGCATTGCGGCTGATTGCATATTCCCTGA 175699 28 100.0 33 ............................ TAATGCAGAACGGTTCATTAAGAGACTGGAAGG 175638 28 100.0 33 ............................ TTTCCCATCATAGTTATTCAACGTGAAAACCAT 175577 28 100.0 33 ............................ CTGGAAACTGGCGCGAGTCTTGGCGCTCTCGGC 175516 28 100.0 33 ............................ TGGAGAGTATCAACAATAACGCTACGCCGGAAG 175455 28 100.0 33 ............................ TGCTAAAGCTTCAACTTTTGATGTAAGCTGTGC 175394 28 100.0 33 ............................ TTGTTCCATCTGTCAAAACGTTCAGTCCGTGTG 175333 28 100.0 33 ............................ TGAATGCAAGAATGAGCGATTTGGATGCCCTAG 175272 28 100.0 33 ............................ TGCAGGAAACGCTTAAGAGGAGTATAGCAACGG 175211 28 100.0 33 ............................ TGTCGGATATGCACTGCTGAAAGTACCATCCGC 175150 28 100.0 33 ............................ TCCATGCTTGCTGGTAGTAATCAGCAATCTTGT 175089 28 100.0 33 ............................ CGAAGCATTCCGCAAGCTCCCCACTGGAACAGC 175028 28 100.0 33 ............................ TCGAAAAAGGAACAATGAAAGTAACAAAAGATG 174967 28 100.0 33 ............................ TTGCATTTACAATCGTTGTTACCGTGGTCTTGA 174906 28 100.0 33 ............................ TTTTAAAGGTGATCCGTGATGGATCTGAGAACG 174845 28 100.0 33 ............................ TTGACGGTAGAGCAGTCAGAGAAGCAGCCATGA 174784 28 100.0 33 ............................ TGTCCCGGCTCGACATCTTGCCCGATACAATAC 174723 28 100.0 33 ............................ TATCATGTACTTCTGTTTCACAATAATTATCTT 174662 28 100.0 33 ............................ TCCGGACAACAATCGCATTCGCCTAATCCAGCA 174601 28 100.0 33 ............................ TAAGTTGCCCCACCACCATTTCCAGCTTTATAT 174540 28 100.0 33 ............................ TTCATTTTTATAACAGTTCAAGTCCATTTTAAT 174479 28 100.0 33 ............................ CGGGTTTATGTGGCTTCGATCAGATATAGGCAT 174418 28 100.0 33 ............................ ACAGGTATTGCAGACAGCCCCCAAACCAGCAAA 174357 28 100.0 33 ............................ TAAAATCCGCCACAAGATTTCCATCTATGGTCC 174296 28 100.0 33 ............................ CGCGCTCTTGCAGATATTCTCTGAGATAATGCA 174235 28 100.0 33 ............................ TACCAGCCTTTTTATTTTTGTAGACATCCACAA 174174 28 100.0 33 ............................ TCTCCGTTCTTTGCTTCCATGAAATCCATAGAT 174113 28 100.0 33 ............................ TAGTGGAAAAAGCTAAATGTAAATATTGTCAAT 174052 28 100.0 33 ............................ TATCACAAGAACTAATCAAAGGAGCAAGTATAC 173991 28 100.0 33 ............................ TCACCGGTGCCGCGCAGTTTCATATCCTCTTCA 173930 28 100.0 33 ............................ TATAATGCAACAATCAGAAAATATACACATACA 173869 28 100.0 33 ............................ TCTTAGGAGCAACATCATTCTTCCACCAGTCTG 173808 28 100.0 33 ............................ TACCGAATGGGTATCTCAAACGGCACAATGTAC 173747 28 100.0 33 ............................ TGTGAAAGTTGTGTATGCCATAGTGACCGCCTT 173686 28 100.0 33 ............................ TGCTGATAGTAGCAGTTGCAGGCTTAGTAGTCG 173625 28 100.0 33 ............................ TTGTGGCCTATTTGTGTCACGGAGAGGAAAAGC 173564 28 100.0 33 ............................ TAGATTATACGCAAATATATGCACAGTTCCATA 173503 28 100.0 33 ............................ TCCAAGCAATCCAGAGGATATTCGCATGCATGG 173442 28 100.0 33 ............................ TCCCCGTGGCGGCTTCCATTTCTTTCATCGTCT 173381 28 100.0 33 ............................ TGGTGATTTTCTCACGCAACAACTTACCAATCA 173320 28 89.3 73 ...C................GA...... TATCCTCCGCGACCAGACGCCCAAGCACCGGGGGTAATCCTTAGGGGATAAGGTGGGGCCATATATCGGTACC 173219 28 75.0 0 ...........A.GA.....G.GT.A.. | ========== ====== ====== ====== ============================ ========================================================================= ================== 49 28 99.3 34 GTGTTCCCCGCGTAGGCGGGAGTGATCC # Left flank : TCAGAGAAAGATCAGATTATTGAGATAGCTGCAATAAAAATGGAAGGCAATGAGATGATTGTTTTTCAGGAATTGGTTAAAATTGAAAAAGGACTTCAAAGAGAAATATCTGAGCTAACGGGAATTACGGATGAAATGCTTGCTAATGACGGGAAGGATATAGATGTCGTGCTTGATGAATTCTTGGATTTTGTGGGAAAGTCAATTCTAGTAGGATATAATGTAAAATTTGATATCAGTTTTCTTAATGCTGGGTTAAAAAAGAATGGTAATGCAGTATTGACAAATAAAACGATATGTCTTTTACAAGAGGCGAAAAGGAAACAGAAACTGCTACGAGATTATAAGCTAAGTACTGTTTTAAAGAAATACAATATAAGTACAGAAGGTTTGCATCGAGCATATGTAGATGTCAAGGCAGAATATGAATTAGCGGTAAAACTAAATATTTTTTGATACTGTAAGATAGGTGAATGGCGAGAAATCAAGGATTTTTAAGT # Right flank : TTAAGAAAAATGATATCTCTAATATCATTACACCAGAAAAGGCAAATGATATTGGCGGACCAATAGACGGGTAAATCCCCATAAAAGTTTACTATTTATTGCCACTTCTGATGGTATAGGTAAAAGCAGATGTTACTGGGGAAATGATTAATCCAATTACATCATTTCATTCGTTAATGCCTTAATTTAGATATCATGACGACAATGCTGTACAATATATTAATAATACTATTGTTGAATTGGAATTAGATAGCAAGTTAACTGCATTTAAAGAAAAATAAAATATAATAATATATCCTTATCACAGTATTTAATTATATATTATAATGTGATAACAGTATTATTTTGCAATATACATCAATACACTAGTTCATTGTAATATAGATATTGTGAATAAAGTGGAGGCTGAAGAAGAGAAAATAGATAAGGTAGTAAGCTCTATATTTAGATGTTTCTGGTGATTTCAAAGCGGTTTTTAATAAGGCACGGGCAGTTATTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGGCGGGAGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42557-43643 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUO01000013.1 Kineothrix alysoides strain DSM 100556 Ga0244723_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 42557 32 100.0 34 ................................ CTAATGGTAGCAGAATAATCTTTAAGGGAATGGA 42623 32 100.0 34 ................................ CATGACGAACTGAAAGCAAAGGGGGAACATGAAT 42689 32 100.0 33 ................................ CTGGCCCTCAAGGTGTTGCTGGCGTAAATGGTC 42754 32 100.0 34 ................................ TTCTTTCCAATTCCACCAGGATTAATATAGATTT 42820 32 100.0 34 ................................ CATGATAACTGTAGGGCGTACACTTACGTTGGGA 42886 32 100.0 34 ................................ CTCATTACATTTTTATCTCTTGTTAAAGATGCAT 42952 32 100.0 34 ................................ TAAAATAAAAATCGGTGTATCTCTTAATATTGCT 43018 32 100.0 33 ................................ CCTTGCCGTTATATGTATGTAAAAGGCTGCATT 43083 32 96.9 37 .C.............................. TTGCATTCATACCGGCTATCTGCGCTACCCACTGCAC 43152 32 100.0 35 ................................ CGTTGTATCAGTGTCAAGAGTAAACGCTTTGCCGG 43219 32 100.0 34 ................................ TAATATCTTATTTCTTAGAGCTTTTTTACCACCA 43285 32 100.0 35 ................................ GACATGACCTGCAAGACCTTAGGGGCATAGGCCAT 43352 32 100.0 35 ................................ AGTATGGACAATAAAACACCGACCAAAGTGCACAC 43419 32 100.0 34 ................................ CTTCGTGTCATAGGTGGAGGAACCGTAGTAGCAC 43485 32 100.0 33 ................................ TCGTTGACATGGTAACCGCAGGTGTAAGCCCTT 43550 30 90.6 33 .......--......G................ AACAAGGCGTTTGAGGAAGTAAAGCCTTTGTAT 43613 31 75.0 0 .C......-.C.C....TG..C...C...... | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 97.8 34 GTCGAGGTCTTCAGGACCTCGTGGATTGAAAT # Left flank : GAGAATGGTGCTTATACTGATAACATATGATGTGAATACGGAAACGGCAGAAGGACGAGCTAGATTGAGGAAAGTTGCCAAACAGTGTGTCAATTACGGACAGAGAGTACAAAATTCAGTATTTGAATGTATTATGGATTCTGGCAAATGTAGGGAAGTAAAGCATATTTTAGAGCAAATTATCGACGAAGATAAGGATAGCTTGAGATTCTATTATCTTGGCAATAATTATGCCAACAAAGTTGAACATATTGGAGCTAAAAAGTCTTTCGATATGGAAGGCCCTTTAATTGTTTAGCCGGGATAAATTTGTACTTCCTGTTTGTGCTATATTTATGCTGTGCGAATGTAAAGTGTACATGAATTTACTGAGAGATTCGCACTTGTTTTAATAAGGATTTTTGGAAAAGAAGTTTATTTGTTTATTGAAAAGTATTTGAATTTGTACAGGTAGTACAATATTTATATTTGTACATAGGTACAATATGTATACTTTTGCT # Right flank : TCTGCACTAATTCGAGCTAGTCTGGATTGCCGGTAGTCTTGGTCTATGAGATTTTATGGATTGTAATACATAAGGATTGAGGAAACCAAGCAGTGAAGGTATAATAAAGAGGTAGATTATTAAATAATTGGAATTGCCCTTAAGATATTTTTCCCAAATAACAGATTGGTAGAACTATAAATGAATTTTTCTAATTCATTTTTCATTATTTCAACTTAATCGTGTTGATGTTACAATAGCGTATATCATTTGTTGGATAATACTGGTGAAAAACATTAGTAGTTTTTTCTAAAGACATAACCGTTATAAAACATCTAATAGCAAAACGGGAGACGAATAAAATGACAAAACAAAAGACAAAACAAATACTGGAAGCTTTGGACAAAGAGTATGGAGTGACCAAGGAGGGCTTTGTTCATGAAACAGACTGGCAGCTATTAATCGCGATTATGCTGAGTGCCCAAAGTACAGATAAGCAGGTGGACGAGGCGCTTCCGGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTCAGGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //