Array 1 16391-16624 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRRD01000046.1 Ferrovum myxofaciens strain Z-31 FEMY_contig000046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16391 30 100.0 38 .............................. AGGTCAATATCATGAATGAAAAATACTTTAATGTCGTA 16459 30 100.0 38 .............................. CAAACGGGCGCACATACACATACCTGCGCAACGTCGTA 16527 30 100.0 38 .............................. CAAACGGGCGCACATACACATACCTGCGCAACGTCGTA 16595 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 ATCCCTTTTCATTCAGGGCTGAGTTCCTAC # Left flank : CAGCTTCATCTCTTGCGCCAGTTCCAGCACCTGCATAAACAATCCTTGCAGTTCGCCCAGAAAACGGCGACGAAAGGTGGCCAGGGTATCGTGATCCGGATGACTGCCTGCCGCGAGGTAACGGAAAGCCACGGAATCGTAGGTGGCTTGTTCCAGTTTACGGCTGGAAAAGACCCCGTTGGCATATCCGTAGACCAGAATCGCCAGTAGGGTGGCTGGGTGATAGGCCTTATGACCACGACCCGCGTATTGTTGGACCAGTGGCGAGAGGTCCAACTGATCAATGACTTCCACAACAAAGCGGGCCAAGTGACCTTCTGGGAGCCAGTCGTCCATAGAGGGTGGCAGAAGAAAATCAGTCTTGCGGTCGGCATCGAGAAAGTGGGCCATAAAATCACTCATCGCATTGAATTATAAATAATTATACTATAATTCGACGCACGGGAAAAGTCCGACAGGCTGCTAGGAATCTATCATCATGAAAGCAACTTGCTGTCGTA # Right flank : CATGAGTGCGAACCGTACCCGTCAGATCTGCCTGGTCGTAATCCCCTAGGTGTCAGGATACATGTCGCCTGAAAGTGTGATTTTTTGACAAAGACCAAGGGGCGGGAAACGGACGTGAAATGGAAAAGTACTCTAAAGAACGGAAGGCTGCGGTATTGAGGAAGATGTTGCCCCCGATGAACTGTTCGATCAAGGAATTGGCGAAGCAGGAGGGCATATCAGACGTTACGTTGTATGCTTGGCGCAGGGCAGCAAAAATGGAGGGGATACCGGTGCCAGGAGTTGTGAGAACGGGAGAGGATTGGTCGGCTGAGGCGAAGTTGGCGACGGTGATTGAGACGGCCAATTTGTCTGAGATTGAGTTGAGTGAGTACTGCCGCGGGAAAGGGTTGTACGTGGAGCAGGTCAAGGAATGGTATCAGGCGGCGCTGGACGGTCAGGAACGAGCGTTGGTATCGCGCAAGGCAGAGTTGAGTCGCACACGCAGTGATAACAAGCAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCTTTTCATTCAGGGCTGAGTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 98-1531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRRD01000138.1 Ferrovum myxofaciens strain Z-31 FEMY_contig000138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 98 36 100.0 35 .................................... GAACACCCTTGCATCACCAAACACCTGGGCATCGG 169 36 100.0 35 .................................... CGGCACGGAGGTTTTGGCCCGATACTTCGGCATTG 240 36 100.0 36 .................................... AAGGAAACGACCATCGGAATAATGGGTAGAGGCATT 312 36 100.0 35 .................................... CCACCGTTTCAATGCGGAGGACAGGGTCCCATATC 383 36 100.0 34 .................................... TATCAATGCGCCCGTAATAAGCGGTATGGATTGT 453 36 100.0 34 .................................... TCCCATCGCTGAACAGTTCGATCAATTTTTCAAG 523 36 100.0 33 .................................... TCAACTCCCCACTCTCCCTTCGCCAGGCGGGTA 592 36 100.0 33 .................................... CCGTAGCAGGTCACGAACTTGCCCGGTTTGACT 661 36 100.0 32 .................................... CCCCCGCTTCCAGGAGTAACTTGACAACGCCT 729 36 100.0 33 .................................... TTTCAGGAATCGTTCAATCGTCATGCGCGTGAA 798 36 100.0 33 .................................... GCTTGAAAATCGCTTCTGACGTTGCTCATATCT 867 36 100.0 33 .................................... CTTGCTCCGCCTCAATCCGAGCGATGATCTTGG 936 36 100.0 34 .................................... ATCCGAGCAATAATCTTAGCCGTTGGGAGGCCAT 1006 36 100.0 34 .................................... AAAAGATAACCCCCCGTATATTCGTAGAATTTAT 1076 36 100.0 35 .................................... AAAACTTACTGTACACAACATGACAATCCAGGTAA 1147 36 97.2 33 ....A............................... AAGTTTGACCACGCCTTCTTGACCGTATTGAAC 1216 36 100.0 34 .................................... AGCCAAGTCACTCCCTGCATGCACGTTTGCCCCT 1286 36 100.0 35 .................................... CCCAGGTTCGCACCAGACAGGTCCGCTCCAACCAG 1357 36 100.0 34 .................................... GCACCGGCTTCAAGGAGTAACTTGACCACATTTT 1427 36 100.0 33 .................................... GTAACGAATTCCAAAAGGACATAGGTTTGGACT 1496 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ==================================== ================== 21 36 99.7 34 GTAGGAACTCAGCCCTGAATGAAAAGGGATTACGAC # Left flank : CGAATGCACAACTTAAACTCAAGGCATTATTGTCTTGACACAGGGGTCCACTTCATTACGACAAGATAACGCCATCCTTCATGAGGATAGAGGTGGTG # Right flank : GCATTTCAGGATACTTGTCGCTTCACTTTCTGAGTTTTCATTCTACTTCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAACTCAGCCCTGAATGAAAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 16372-17105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRRD01000048.1 Ferrovum myxofaciens strain Z-31 FEMY_contig000048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 16372 36 100.0 36 .................................... TATTCTCACGGTTCAAATCCTCGTCACTGATGCGAG 16444 36 100.0 36 .................................... ACAATTTGCTCAATGCCTGTTCAGGCAGGAATATAG 16516 36 100.0 33 .................................... TTTCACGGGCGCTCCTCCATTTCAGGAATCGTT 16585 36 100.0 33 .................................... ATTGCACGGGTTTGACCCAAGAAGGAGCAGGAT 16654 36 100.0 34 .................................... ATTTCGTCTCCCTCTTGGTTAAATATGCATCTAT 16724 36 100.0 32 .................................... TTCATGGACTGTTTGTTTTGCAACGCACAAGG 16792 36 100.0 34 .................................... TGTCTTGGCCTCAAGTTGTTCCAGCGTCATGCGT 16862 36 100.0 34 .................................... GTTATGGCCCGTTCTGTTCCGTCTGCCAGTGTTG 16932 36 100.0 34 .................................... GAGGGTGGTACTGTCTAGTACTGCGGGAAAGGTC 17002 36 100.0 33 .................................... TCTCCGTCAAATACCCACCCAATCACTGACTTG 17071 35 80.6 0 .........................-.T..AGT.GA | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 98.2 34 GTAGGAACTCAGCCCTGAATGAAAAGGGATTACGAC # Left flank : GCAAGAGACTTGCCGAGAGAATCGAGGATCTCTTTGCAAAGATGGCCGCTGCAGTTAACAGTGGAAATATTCCGGGATCCTGATCATGCGCTGCTGGGTGATTGCCTATGATATTTCAGATCCAAGACGCCTTCAGCGTGTCCACCGCGCCATGATGCGGCATGCTACGCCGATCGAATACAGCGTGTTCCTGCTCATGGGAACGGAGAATGAGAGGACTCGCTGCCTTGAGGAGGCCAGTGGATTGATCGACGACCATTCCGACGATCTGCGCTGTTATCCCCTGCCGGAACGCGGATTGCAGGAAAGAATTGGCAAGGCCACTCTGCCAGCCGGAATACATTTCAACGGTTTGCCGGGAACATTGTGATTTCGTCTTTAATTTACCAGCGCATAATCGAGTTTGCTTCACCTTTGCGACATAACTATTTCAGTACAAGAAAAACCCGCGAAAACCGCTTGCAATTCATTATAATAAAAGGAGAAAATGCATATGGTGA # Right flank : CCCTGAAATCAAGACAGTAGTTTATGCTGTGCGCTGTCATAAGGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAACTCAGCCCTGAATGAAAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 77-533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRRD01000061.1 Ferrovum myxofaciens strain Z-31 FEMY_contig000061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77 29 100.0 32 ............................. CCTGACTGACTAAGCCTATCTGACTGACTAAA 138 29 100.0 32 ............................. AATTCTTGACGAAATAGCAGAAAAGCACATGC 199 29 100.0 32 ............................. TTTTGTGCCGTCTGCCAGCGTGCCGATCCACA 260 29 100.0 33 ............................. CCAATAATTCATAACGTCCACGAACATCAGTGC 322 29 100.0 32 ............................. TTTTTCACCACCACCGGCTTTTTCTTCGTCAA 383 29 100.0 32 ............................. TTTTCACCCGCCATGATTTTCTCCTGATTCGG 444 29 100.0 32 ............................. TTGGAATCCCTGACCTCGGAAGCCGAGTAGTT 505 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GGGCCTATCCCCGCAGGTACGGGGGAAAC # Left flank : GATCGGAGTATGCCGGGGTCAATCCTCCCTGAATACAACGCCGCTCAGTTACCGCTTACTCAGCAAGTGAAGGAAAG # Right flank : CTCTCGTAGATAAGGCCATAATCTACAAAAGAAAAATGCAAAATACATTCATTTTTTTAAAGAGCATTTTACAACATCCGCTTTGTCAGCCACATCCCATCCATCTCCACCAACTCACGCGGGGGCGAACCCAGGTTTTCGATGCCAACACTGCCCGTTACATTCATATCTCGCCAAACCATTACGATGCTGCCGCGTGGTTCGGCTCCGTGCCAATCAGATAGCACTTTCCAAATTCGCAAACGCACACCAGCATTCATGCGCGGGGAGATGTACACCGCCGGGGCCACTTCCAGCATAGTTGATGCCAGAAATCCCCGGAAACGATCCGCTACATCACGCGTCACTATCACTACTAGAGACATCCAGTTCCTCCGTGCGTAACACCAGTTTTATTTTGTCAATCATGGATGAAATTACACTTTGCTTGCGAAATACCACTGATGCTTCTCGCCTTACCAAGCGATCAATGCTCGTATCATCGCCAACCACCACATTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCTATCCCCGCAGGTACGGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 145-1393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRRD01000070.1 Ferrovum myxofaciens strain Z-31 FEMY_contig000070, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145 29 100.0 32 ............................. ATTGCCCGCACAATTTATAGTAGCACCATGTC 206 29 100.0 32 ............................. TGCAATGAACGCTATATTTGCACCTTCTTTTT 267 29 100.0 32 ............................. CGGGGCACATAAACCATACCCAGGGTAGCCAC 328 29 100.0 32 ............................. TGTTGCCCGGTTACCAAATCCACGACTGATGA 389 29 100.0 32 ............................. TCGGGTTTATCTGCGGTGCTGGAATCAGCAAC 450 29 100.0 32 ............................. TCGTGATTGGGATGGACTTCGGCCTGACACCA 511 29 100.0 32 ............................. TAAAGGTTGTGCCTATCACCAGAGCCGACACC 572 29 100.0 32 ............................. ACCACATCATTTGATGCGTCTGCTGGGGGTCT 633 29 100.0 32 ............................. TGGGAGCAGAAAGAGACGTTGCCCCGTTTTGG 694 29 100.0 32 ............................. TACCACCACTTTGTCGGGGTGTATGGCGCGGT 755 29 100.0 32 ............................. ATGGGCGATATTATTATGATGGGTCAGAGAGA 816 29 100.0 32 ............................. TGCGCCGTATCGGAGTAGAGGTATCGGATGGG 877 29 100.0 32 ............................. CCGTGGTGGTAGTAGTCGAGGCCCCTGAACCT 938 29 100.0 32 ............................. AATCAACAGCGCAATGATGTCAAATACTAACG 999 29 100.0 32 ............................. AATCAACAGCGCAATGATGTCAAATACTAACG 1060 29 100.0 32 ............................. AATCAACAGCGCAATGATGTCAAATACTAACG 1121 29 100.0 32 ............................. TCGGTGTAAATCGGATAATCCTGCAAAATGTT 1182 29 100.0 32 ............................. TATCGATGCCCGGAGCCGGTTTAATGTGCCCT 1243 29 100.0 32 ............................. CTGCACCGAGCGGACCTGGGGTGTGCTGATCT 1304 29 100.0 32 ............................. GATATATTTGTCTGCGTGGTTGATGTAATGGC 1365 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTTTCCCCCGTACCTGCGGGGATAGGCCC # Left flank : TGCTGTGGCGAATTCTCCTGCTACGCTTGGTTTCCATACCTGCTCTCCTGTGTCATAATCTGGAGAGAAGTATGCGGAAAAATTATCCGGGAAAATACAACGCCGCTGGCTTACCGCTTACCTTGCTGATGATCATTATTACATG # Right flank : CTACCTTCATGCACTCCCAATCTTTCGCCGAAGCACCTGAGTTTTCAGTCCCGGCTTGCCAGTTATTTTCCTTTCCTCAAGCTGTTGGTGGGCTGCATTATCGACATACTTCAATAGGTAATCGCCGAAAGTGCTACTTTTGTCGCCCACCATCATGATCGAACTTGAGTCAACTTGAATATCAGTCTAGCTATAGCGCCGCACGTGTTATCGGCATAAAATAGTTTGGGGTGATACAAATCCAAGCATTAGCAAAATGAAGGGTGCCGTCCTTGAGAATGGAACAAGTATGACCGCAGAGTTGGTGGAAGAAAATCGCCTGTTTCTAGAGCAATCAACGCCTCCATTGGTCGAAATTGAGATCGTATCCGACCCTACCACAGGATATGCTGCCATTCAGAACAGCGTACCAGTTGTCCGAGTTATCACTCTCTCAAATAAAGGGGATGCAAGGCTAACCAATATTGAGCTCTTGGTTCATTGTTCTCCCTCATTTGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGTACCTGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //