Array 1 10742-11609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMZX010000014.1 Escherichia ruysiae strain C17-1 c_000000000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10742 28 100.0 32 ............................ CTGAAGCCGGTGATCTCCATGTGGCTGTCCAT 10802 28 100.0 32 ............................ TGAACAGATTATTCCTACTCAGATGGAGTACC 10862 28 100.0 32 ............................ TGACTTCCGGTAGCGTGTACTACGCGTATAGC 10922 28 100.0 32 ............................ TTTAATCTCCAGCGAACGGAAAAAACGCTGAT 10982 28 100.0 32 ............................ TTATGAAGCAATAATGGGGCTGGTAGAACGCT 11042 28 100.0 32 ............................ GAGAATGCATCTCTTTGGGATACAAGGAACGT 11102 28 100.0 32 ............................ AACCCCCCAGCCGACAATCTCCGCCTCCAGTC 11162 28 100.0 32 ............................ TTTGTATTAGCGGTAGCCTCCCGAACTATAAG 11222 28 100.0 32 ............................ TACGCAGCGTTAAAAATTATGCAGCCGTCATT 11282 28 100.0 32 ............................ ACTGACAGAAGATTTAGGCTCGTCGCCAAGCT 11342 27 96.4 32 ..........-................. GGTATGACCCACATTATGAGCCATGCTCGCAC 11401 28 100.0 32 ............................ ACTGTACAGAGAGAAACTAAATTACGTATTCA 11461 28 100.0 32 ............................ ACGATAGCCGCAGCGGCTGTGACTGATAACCC 11521 28 100.0 32 ............................ AGACGCTCTCTGGTGGTGAGAAGCGGAAGGTT 11581 28 89.3 0 ....................T...C..T | C [11604] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGAGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20478-21104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMZX010000014.1 Escherichia ruysiae strain C17-1 c_000000000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20478 28 100.0 32 ............................ TCCCTCCATCGATAAAATCCTGAATCCGCTGG 20538 28 100.0 32 ............................ TTTCCGTCTCCAGCAGACGCGCAGTGCTGCCG 20598 28 100.0 32 ............................ TCGCTAAAGCGGGGATTCAGACGCCTGACGTC 20658 28 100.0 32 ............................ GGTAACGGCGCGCTGCCTCGAACAGCAGGCAT 20718 28 100.0 32 ............................ AGAACGACGGCACAACGTACCCAATCGCCTAC 20778 28 100.0 32 ............................ CTTCTGCCGTTGCAGCGTTTCCGGTTGCGTCG 20838 28 100.0 32 ............................ AATAGCTTCCGCTTCTTGCCACGGTTTACCGT 20898 28 100.0 32 ............................ GCAAGTAAAGCTCATCGGTATCTGATGGACTG 20958 28 100.0 32 ............................ TGGATAGCTTCCGCTTTTCGGATTGCCACCAC 21018 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 21078 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCTTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75931-75536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMZX010000003.1 Escherichia ruysiae strain C17-1 c_000000000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75930 29 100.0 32 ............................. CAGGCATCATATGCGGCTTTCTGCTGATAGTA 75869 29 100.0 32 ............................. ATGAATTACGCATTATTTCTTATATCGGCATT 75808 29 100.0 32 ............................. CGAAAAGGAAGAAAGTCAGTTAATGGCCTTGT 75747 29 100.0 32 ............................. GCAGCCCGAACAGCGGCGCATATGACACAGAC 75686 29 100.0 32 ............................. GATCAACCGGGGATTCCTGGTCTTCGAGGGGC 75625 29 100.0 32 ............................. TGAAAATCCTTCCTCTTGTTAATCGATATATT 75564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCCCTTCAGCCGATTAGTCAGAAAGAAGATGCCACGCGTTTATGTATCGATACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAGAATTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGCAGATTTTAATTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAATAACATATCTAGGTAGTTCAAAATAACTCTCTACCCCCGAGGATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAAGTGGCATTTGTATAATTACTTAAACCATTAAAACCATCTACTATCTTGTTTCATTTTCAGCAATATATCTGGCTGTTAATTAGTTTTTCAGAATAAAAGTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGTAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTGATTTTGCATAACCCATTTTATGCACTATTGATGAATAGTTCTTATGGATAAAGATATCCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTTCTTTATTCTAAGGGTATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //