Array 1 217405-217924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059095.1 Flavobacterium psychrophilum strain 141127-1/2N chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 217405 37 100.0 32 ..................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCA 217474 37 97.3 32 .......................A............. ASCTGMAAAAAYACCCCTTCTAATAGTAGTTA 217543 37 94.6 32 ..................T....A............. CTCTGCAAAAGACCCTTTTCCGATAGTAGTCA 217612 37 100.0 32 ..................................... CTCTGCAAAAGACCCATCTCCAATAGTAGTCA 217681 37 100.0 32 ..................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCA 217750 37 100.0 32 ..................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCA 217819 37 97.3 32 .......................A............. GCCTCCAAAAGCATACCTTCCAATAGAAGTTG 217888 37 81.1 0 .............A.....C.........TT.TTG.. | ========== ====== ====== ====== ===================================== ================================ ================== 8 37 96.3 32 CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATRATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGTCA # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : CAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1326664-1325558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059095.1 Flavobacterium psychrophilum strain 141127-1/2N chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1326663 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1326587 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326512 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326436 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326360 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326284 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326208 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326133 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326057 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325981 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325906 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325830 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325755 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325679 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1325603 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 15 46 99.9 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAATAATTTAATTACACCCAACGGGTTATTTTAGCTTATAATTACCAACTTTTGTTTTCGTCAAATTCCCCATTTGTGGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACATTAATGCGCTAATTATCGAAGGTAGCACTGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAGGACGATTATAAATTTATGCTAAATATTAGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAGATATATCTAATACTAGAGCGTACGACAGGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAAAAACAATATCGAAAAACTGAAAGAGAATGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTATATCCGTGTTTGAATACWSAAAGAGAAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //