Array 1 334435-337023 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAFV01000003.1 Klebsiella pneumoniae strain CDPH3020 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334435 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 334496 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 334557 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 334619 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 334680 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 334741 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 334802 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 334863 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 334924 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 334985 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 335046 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 335107 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 335168 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 335229 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 335290 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 335351 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 335412 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 335473 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 335534 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 335595 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 335656 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 335717 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 335778 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 335839 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 335900 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 335961 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 336022 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 336083 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 336144 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 336205 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 336266 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 336327 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 336388 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 336449 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 336510 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 336571 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 336632 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 336693 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 336754 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 336815 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 336876 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 336937 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 336995 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //