Array 1 281948-278779 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUZ01000002.1 Vineibacter terrae strain CC-CFT640 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 281947 36 100.0 32 .................................... ATAATCGGAAATGTAGTGGCGCATGGCCTATG 281879 36 100.0 32 .................................... TGATTTGTCGGGGCATGTTGATGCCATCCGTC 281811 36 100.0 32 .................................... CTCGATCAGATTGAAATGGTGATTGGATTACC 281743 36 100.0 35 .................................... AACGGAAGCGCAAAACCATTCGACGTCGCCGTTGT 281672 36 100.0 33 .................................... CACAACGTACTGGGCGTTGATGGTCTGATAGAG 281603 36 100.0 34 .................................... CTGTCATCTGGACAATAGAGCGGGACTGGAACCC 281533 36 100.0 34 .................................... GGGTCTGGGCTTGCAAACCGATCACCAACGTCAG 281463 36 100.0 34 .................................... CCCTGCCCGTGGCGGGGCGACCGGGACCCTTTCG 281393 36 100.0 33 .................................... GCTCACCGGCTAGGTCCATCTGCGAGCGGGTCT 281324 36 100.0 35 .................................... TCGGCCAGGCCGATCATGTCGGTCTTGACCGCGGT 281253 36 100.0 36 .................................... GCGCGTAACGGACCAGATGTACCAGTCGCCCCCGAT 281181 36 100.0 36 .................................... GGCCGGACAAGGCACAGGGTGCAAGCCGTCATCCAG 281109 36 100.0 35 .................................... CAGGCGATCTGGGAAATGTGGTCGGCGCGGTTGGG 281038 36 100.0 33 .................................... CGCCCACTTGGGCGCAATGCCGATTCGGAAGTG 280969 36 100.0 32 .................................... GTCAGCGATTACGCCATGCCTCAATCGCTACC 280901 36 100.0 33 .................................... CACGGTAGCGCCATGGCCTATGCCTCCTGCCCC 280832 36 100.0 34 .................................... GCCAAGCGTCGTACGGAGAAAGTTTCCACGTACG 280762 36 100.0 30 .................................... CCGGACAGAGCGAACATGTCCGCGGCGAGC 280696 36 100.0 30 .................................... GCTTGTGGTCACCGCGTGCGATGGCGCGGA 280630 36 100.0 35 .................................... CCCAGCCATTGTCCACGAATTGGTGGATCGACAAC 280559 36 100.0 31 .................................... TGAAGGTGGGCATGGTCATCACTCCGCTGCC 280492 36 100.0 35 .................................... GGCAGGCGAGGCCGCGCATGCTCTGCTTGGGATAG 280421 36 100.0 36 .................................... TCCGCGGACTCCGCAACGACCTCGACCCAAGGCGCC 280349 36 100.0 34 .................................... CCCAGACAGGGCGAACATGCTCGCTGCGAGCTTG 280279 36 100.0 35 .................................... CGCGCGACCCTACGCGTCGTCGTCGACTTGCTCGA 280208 36 100.0 33 .................................... GCCGTCGCGAATGTTGTATGTGTAGCCTCCCAA 280139 36 100.0 33 .................................... GCCTCACGATACCCCATGCTACTCCTGCGGTGA 280070 36 100.0 33 .................................... GCCGTCGCGAATGTTGTATGTGTAGCCTCCCAA 280001 36 100.0 34 .................................... TTTTCTCGCCGTTGTAGCGAATTTCGTCCGCAAG 279931 36 100.0 33 .................................... GCGGGTTAGGCGAACGTCGCGTGTTGCCCCGCC 279862 36 100.0 34 .................................... ATCGTGCCGAGGCACATACAGTCTAGTCATGTTG 279792 36 100.0 34 .................................... CTGGTGAGCGGCGTGCAGCCGATGGGTGCCCTCA 279722 36 100.0 31 .................................... GCATTCACGTCTGGCTGGACCTTCGCCTCCG 279655 36 100.0 32 .................................... GTCAGTACTGCCCGGCATCGAACCGGATGCAG 279587 36 100.0 32 .................................... TCCCGAAGCCGAAGGACGGCGAGCCGGGTAAG 279519 36 100.0 36 .................................... TCAATGTACTGACGCACCTTCGCAACCATGGGGTGG 279447 36 100.0 35 .................................... CCAACCAGCGCGGTCGCCAGTGCAACGCCACCACC 279376 36 100.0 34 .................................... CTGACCCTGATCTTGAGGGTGGGGCCGCAGGTGC 279306 36 100.0 33 .................................... GGATCGCTTGCCGGGCATGGCACTGGAGCGCCA 279237 36 100.0 31 .................................... ATGTGGTGGCGGGCAAGGGACTTGAACCCTT 279170 36 100.0 35 .................................... TAGAGCGGTCCGAATGGGCTGTCGTAGCTCACGAA 279099 36 100.0 35 .................................... TGTAGCGGCCTCCAGGAGGCAGTAGATCTCCGGGC 279028 36 100.0 36 .................................... TACGGGTCAGACGGGACTTCTTAGGGTCAACCGACT 278956 36 94.4 36 ..................C............C.... TGTGCGATATCCGCGATCTTGTCGAGCGTGTACACG 278884 36 100.0 33 .................................... GTCCGGGCCGTAGCCCTTGAAGATCACGTTCTG A [278860] 278814 36 86.1 0 .....A........................GG.CG. | ========== ====== ====== ====== ==================================== ==================================== ================== 46 36 99.6 34 GATGAGCAGCAGACCCGATGAAAAGGGGATCAAGAC # Left flank : CGGCTGCGGCGCCTGGAAATCTGGCTGTGGGATCGCAGGCAATGACGGCCGTGAGGACGCGCTACCTGGTCTGCTACGATGTCAGCGACCCCAGCATCCGCCGCATGGCGCGGCGGTTGACCCGGCTGCGGAACGCCCTCAAGGAGGACTGCCTGCCGGTCCAATATTCCGTGTTCCTCGGCGACTTCACGCTGGCCGGATGCCGCGGCGCGCTCACGCGCATCGCGCGCATCATCGATCCGTCGCGCGACGATGTCAGGCTGTATCCGCTTCCGGTCAACCTCCAGGTCCATGTCATTGGCCGCCCGATACTGCCGGACGGTATCTATACGCCGATCAGACACTGGACAGAACCGGAGGGTAATGCTCCAAGATGACGGATGAGGCTGTGAAGAGATCGCGTCCATGTGCCGCCTGTGCCGGTCAACTCGACATGTGCGTCAGGTTCCGTCAACGGTGGCGCCAGTCTGTTGATGTATATGGAGATTTGGATCAGCTCG # Right flank : CCGCCAAGGGAGCGGTTCTGATAGGTGACGAAGTTCGTCCACAAGCTTGTGGCCGTTCCCACGTGAGAGGCGGACCCGATAAAAGGATGCCTCGATTCATGCCCGTCGGTCGGCTCAACCACCGGCATGAATCCCAACCCTGCGTTCGCCGCCAAGAACCGCCCGTGCTTTCGACGATGGTGCGAGATGAGCTTGTTCGACTGGTTCCGGAGAAGGAAGCCGACGGCCTGGGAGGCGCTGCAGCAGAATCCAATTTTCCAGGAGCAACGGCAACTGTTTGAGATGTTGAGCCGCCTCTGCGAGGCGGTCGGTGTCGACGCCGATGAATTGCCGAACGGCCACGGTGAATTTGGCCTAAGCCCTTCCAACCCCATCCCGTGCAAAACGGTCTTTGGCAGCATCGCGTATCTTGCTCGTCTTCGAGCCGCAGACGGAGGCAAGGTCGTCTATGAGCGTGCCTTTTCTGTCGTGTCCGACACGGTTGCATATCCGGTGGATGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAGCAGCAGACCCGATGAAAAGGGGATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 4624-4394 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUZ01000092.1 Vineibacter terrae strain CC-CFT640 contig092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 4623 32 100.0 34 ................................ CATCAGGTCGGAGCGGGGCGTGCCCGGTGGCAGC 4557 32 100.0 34 ................................ TCGTCCCACCAATCCATGATCGCTCGATCGGACT 4491 32 100.0 34 ................................ ACCGGCGCGGTGACCAGCGGTGCGCTGAGCGACG 4425 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ================================== ================== 4 32 99.2 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : AGTGTTTCGATCCACGCTCCCGCACGGGGAGCGACATCTCCTGGCCCCGGTTGTCGTAGCTCCAGACGAAGTTTCGATCCACGCTCCCGCACGGGGAGCGACGCCGCTCTCGCCGATCACAAGCACCTCCACGTCAAGTTTCGATCCACGCTCCCGCACGGGGAGCGACGCCGCTCTCGCCGATCACAAGCACCTCCACGTCAAGTTTCGATCCACGCTCCCGCACGGGGAGCGACGCCGTCGTACATTCTGCACAAGCGCATGATCGAGTTTCGATCCACGCTCCCGCACGGGGAGCGACTCTTCTGCAGCGTCGGTATGTTGGCGTTGAGGTTGTTTCGATCCACGCTCCCGCACGGGGAGCGACCAGTGTCGACGCCGCCGCGCTCCGCGCTCCGCATGTTTCGATCCACGCTCCCGCACGGGGAGCGACCGCAGACGGTGCGCACGTCGGCTCGCACGACCGAGTTTCGATCCACGCTCCCGCACGGGGAGCGAGG # Right flank : CAGGTCGAGATCCGGGCGGCCCTCGTAGCTTAGCGAGGTCGCTCCCCGCGCGCCTGATGCGTCCGAGTTCGACAGGGGCGCTGCCAAGGCAAGGGTGGCGCAATGCAGTTTCATGGCAATCATCCGTCAGATGGCCTGCGGCATGTATTGAAGCCGTGAATCGTCACCACCAGGGAACGGGAGCGGCTTCGCGTGGGTGCCGCGGTAAAAATTCTTGTCCTCTGAGTGAGAATAGTGTACAATTATTGTTAACAGCGTTCCCGCCGCCGGGGCATACGGGCGTTATCGTGGGCCCCGTCGCAAGGGGCAAGGCCGCCGCCGGGTCACGCTTCGGGCGCTTCGTCCGTTCCACGACACGGAGCGCGCCAGCTTGCTGCGTATAGGCCCGTCGGCGCCGAACCCGCAAACCCCGCAAAACTCCGCAAATTTCTGGGATCCGACCTATGTCATTGGAATCGAAACCAAAAGACGTTTTTGGTATTTCTGGCGCGGACAGCGAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4625-6048 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUZ01000092.1 Vineibacter terrae strain CC-CFT640 contig092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4625 32 96.9 34 C............................... TCGGTCGTGCGAGCCGACGTGCGCACCGTCTGCG 4691 32 100.0 34 ................................ ATGCGGAGCGCGGAGCGCGGCGGCGTCGACACTG 4757 32 100.0 34 ................................ AACCTCAACGCCAACATACCGACGCTGCAGAAGA 4823 32 100.0 33 ................................ TCGATCATGCGCTTGTGCAGAATGTACGACGGC 4888 32 100.0 35 ................................ TTGACGTGGAGGTGCTTGTGATCGGCGAGAGCGGC 4955 32 100.0 35 ................................ TTGACGTGGAGGTGCTTGTGATCGGCGAGAGCGGC 5022 32 100.0 35 ................................ TTCGTCTGGAGCTACGACAACCGGGGCCAGGAGAT 5089 32 100.0 33 ................................ ACTTCGTTGCGCTTCCCAAACACCTCAAGGTCC 5154 32 100.0 37 ................................ ATGCGCTGCAGCATCCCTTATCTGAAAACACGTGACA 5223 32 100.0 34 ................................ AGGACCGTCTCCGCGAAATGGTCAACCATGTCCT 5289 32 100.0 35 ................................ GGGAGACACGCTGGGCCGAGGCCCAACCTTCACCG 5356 32 100.0 34 ................................ TACGCTTACGCACCGTATCGAGACGCAATCCAAA 5422 32 100.0 33 ................................ TCAGCCGGTACGAACTCTTGCGGGTTCCACCAT 5487 32 100.0 34 ................................ CTTTTTGGCGCCCACCAGGAACCGAAGTGCTTAG 5553 32 100.0 35 ................................ TCGCGTTAACTAGCCTTGACTGTAAGAACGTCGAA 5620 32 100.0 34 ................................ ATGCGTCAGCACACCAGCGCCCGTCAGGAGCCTG 5686 32 100.0 33 ................................ TTCAACTACTGCGCTCACGACGAAAACTCGACC 5751 32 100.0 33 ................................ AGCACCAGGCACCGGGTAAAACAGGGTGATGAC 5816 32 100.0 34 ................................ AGGTCATCCGCGACGACGCTGAGCGTGTCGCGAA 5882 32 100.0 36 ................................ CTGGGCATCATCGGCAACGAGACCGGCGGCCTGCGG 5950 32 100.0 35 ................................ ACTGCTCCGCGAGCAGCACCTTCAAGATTTCGACG 6017 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 99.9 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CGGCGGCGGGAACGCTGTTAACAATAATTGTACACTATTCTCACTCAGAGGACAAGAATTTTTACCGCGGCACCCACGCGAAGCCGCTCCCGTTCCCTGGTGGTGACGATTCACGGCTTCAATACATGCCGCAGGCCATCTGACGGATGATTGCCATGAAACTGCATTGCGCCACCCTTGCCTTGGCAGCGCCCCTGTCGAACTCGGACGCATCAGGCGCGCGGGGAGCGACCTCGCTAAGCTACGAGGGCCGCCCGGATCTCGACCTGGTCTCGATCCACGCTCCCGCACGGGGAGCGACCGTCGCTCAGCGCACCGCTGGTCACCGCGCCGGTGTTTCGATCCACGCTCCCGCACGGGGAGCGACAGTCCGATCGAGCGATCATGGATTGGTGGGACGAGTTTCGATCCACGCTCCCGCACGGGGAGCGACGCTGCCACCGGGCACGCCCCGCTCCGACCTGATGGTTTCGATCCACGCTCCCGCACGGGGAGCGACC # Right flank : CTTCCGGTGCCGCATGTCGTGAGCCTGGCGGCGTCGAGTCATCGACCCGTTCATGAAGCAGCCGTCCCTCGGCGGTGGCACCATCCTCAGCCCAGATCCGCTCCACATGGATCAGCGCACATTGGCGCGGGCAGAACAGATAGTGCTGCAACGCAGACACCGGCACGAGCGCATCCTCGATGGCGCCGTCCGGCGGGGGCGCCTGCATCATGGTCAGTGAGGCTCGATGATCTCGACGGTCTCCGGCAGGCCATCGCGGTCGATCGTGACCTCGTAGTCTTCCCATTTACGTGCCACAGGCCAGTTGCCCGTCGCCGGGCTCCCAATTTCATGCCTGGATCCCTGGTAGACGCGAAAGGTCTTGACCCGGTCAAACAGGCTCTGCGCCTGGGCATTACCCAGTGCAGAAGCGTGGCGGAAAACGATGAGCTTGCGTGTCGACATCTCGCCGCGCGCCGCAGACCGATCGTGATCAAACATGTTACAGAGCGCTTCCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26226-31075 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUZ01000077.1 Vineibacter terrae strain CC-CFT640 contig077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 26226 35 100.0 38 ................................... ATTCGTAGTTGGTACGAGTGTCATTCCACCGACCGATG 26299 35 100.0 41 ................................... ACGGCGAGCAGATGCGCTCGATGACGGATGAGGTGGACCGC 26375 35 100.0 37 ................................... ACGCGTTCGGCAGGGACGTTCCGTTGCCGGCTGGCGA 26447 35 100.0 40 ................................... ACGGTCCGGCCCTGGCCGAAGCGGCGGTGCGCCAGCATCC 26522 35 100.0 36 ................................... ACCCGCGGGCACGGCTCAAGGCGTCGTCGATCTCAC 26593 35 100.0 38 ................................... AGAGGGCGTCGGTGGCTGGACGTTTCTATACCGGGCGC 26666 35 100.0 37 ................................... AGGACGCGTCCTCGCCGCAGCAGATGCCATTCGTGCC 26738 35 100.0 38 ................................... AACGGGATCTTCTGGCGCTCGATATGGCGAAGAAAGAG 26811 35 100.0 37 ................................... AAAGTACCGCGATGCGCTCGACGGTCATGGAACTACG 26883 35 100.0 37 ................................... ACCCGGCGATCGCGGTGGCGCATACGCTGCGCGCTTC 26955 35 100.0 38 ................................... AAACGCCGCGGCGGACAACTGGCGCGATGCCTACCGCG 27028 35 100.0 37 ................................... ACGCAGCCAGCCGCGCAAGATCGGCGGCGTTCTCCGC 27100 35 100.0 39 ................................... AACCATTAGGTACTGACGCGGCACATCGGTTGGCGTCGT 27174 35 100.0 38 ................................... AATCAGCGCGACTATAAATGGCTGATGCGCGGTCAAGA 27247 35 100.0 39 ................................... AGCGGTGGCGGCTCCGGTGGCGGCCTCGGTAGCCTGCTT 27321 35 100.0 39 ................................... AACGGATATGCCACTCGTGAACATGGCGTCATAGACGTT 27395 35 100.0 41 ................................... AGAGGCCCATATCAAGCCACACCTTGGCCATCGGCCGGTGG 27471 35 100.0 40 ................................... ACTGGTCGTGCCCTTGCCAGGCTTGCCGTCCTTGTCGCCG 27546 35 100.0 40 ................................... ATGTGGGCAACAAGGAGTCTGGATGCCGAGGGCGGCGCGA 27621 35 100.0 36 ................................... ATTCGTCGTCGACAGGTTCGTTCTCGTCGACAACAG 27692 35 100.0 38 ................................... ATTCTCCGCGTCGCGCTCTTCCCTGCCGTAGAAGAAGG 27765 35 100.0 37 ................................... ATCAAGCTGGTTGCTGACGAGCCCACACTACGCTGGG 27837 35 100.0 40 ................................... AGCCGCTGCGGCCGGCGAAGTGCCCTCGCCTGGGGAACGG 27912 35 100.0 40 ................................... ATTGCCGATGGCGCGATAGTGGCGAGCGTAGTCCGCGTGC 27987 35 100.0 38 ................................... ACCAGATCGCCAGCGAATTCGAGTATATCGAACGTGGA 28060 35 100.0 38 ................................... AGCATCCTTGTTTCGGCTTCATTCCTTTCGGCAGCACG 28133 35 100.0 37 ................................... AGGCTATTGTCGCGCGGCCGTTCGACAAGCTTCTGGA 28205 35 100.0 38 ................................... AGTTCGCGTGGCATCCGGTGAGAACAGGTAAGCGGGAG 28278 35 100.0 38 ................................... AGCGCGCCACGGCAGCCGCGAGGAGCTGATCAAACATG 28351 35 100.0 36 ................................... AGCGCCATCAGGGAGGACGACATGGCCAAGAAGAAG 28422 35 100.0 37 ................................... GCTTAAGGTCCTTGTCCCCGCTGACGATAACCATGTC 28494 35 100.0 37 ................................... GCAGGCTTGGCACGACGGACCGCGGCAGCCATGGCTT 28566 35 100.0 38 ................................... GACTCACTTCTTCGTGGAGCTTGTTGATGAGTGCGAGA 28639 35 100.0 39 ................................... GTAGAGGAAGTCCTGAAGAGCTCCGGCCACGCGGTCAAG 28713 35 100.0 40 ................................... GCTGGCTGATATCGCGGAACTGCTGGCGCATGCCGACAAG 28788 35 100.0 37 ................................... GAAGCGAGCCGGCTTCGACGCGATCGACTCTGGCCGT 28860 35 100.0 40 ................................... GCGAGCGCAGCATCCATGTGACGGCGCCGCAATCGACACG 28935 35 100.0 37 ................................... GCTAAAGACCCCAATAGACTTCAACAAATCTTGCAAA 29007 35 100.0 37 ................................... GGGTCGGTACTGACACTTCGGCTCCGGACACTCTTGG 29079 35 100.0 37 ................................... GTCAGCCAGCGTGGGGCGCTTTGCCTTTGCCATTTTG 29151 35 100.0 38 ................................... GGACCAAAGCGTGGGATCGCCTGCTGGACTCTTTGGCG 29224 35 100.0 37 ................................... GAGGTCGATCGCCGTGATGTGGCCCCCGGCGCGTGCG 29296 35 100.0 37 ................................... GCACTTCTTGCCGTTGACACGGGACTGCAGCTGCTCG 29368 35 100.0 36 ................................... GAGGTAGTCGCCGCGCATCGTCGATGTCAGTTGCTG 29439 35 100.0 38 ................................... GATCGAAATGGCACGTGATCAAATCCGCCTCGGGCGCG 29512 35 100.0 39 ................................... GGCCGGCATCGCGGCGACCGGCTGCACGCCGACCGTGAT 29586 35 97.1 39 .........C......................... GAGACCCTTGGCGTCCTCGAGGTTGGCGCCCGCGAGGTT 29660 35 100.0 39 ................................... GGTCGGCGCTTCGATCTCGATCCCAACGAAATGGTCAAG 29734 35 100.0 38 ................................... GGCAGCGGGCACCTATAAGCCCGTGCCGTGGACTAGCA 29807 35 100.0 38 ................................... GTTTGCGACGTCCGACAACGGCCCCATGCCGGCCAAGT 29880 35 100.0 37 ................................... GCTGACCAAGCACGGAACCCGGGCTGTGACCCTGCCG 29952 35 100.0 38 ................................... GAAGGCTGGCGCGTACCTGGGCGGCGCGGACCTGGGCG 30025 35 100.0 39 ................................... GGGGGTCGCGCCTCCGCTGTATGACGCCAGAAACAATCG 30099 35 100.0 38 ................................... GCCTCCAAGAAAGGCGCGGGTGACCATGGCGGGGCGGG 30172 35 100.0 37 ................................... GCCACCGCCTCCCGGCTCTGGTCGAGGTTGGCGCGAG 30244 35 100.0 37 ................................... CATCGTTGATGGCGCGCTCAACATGGATGATGTCATC 30316 35 100.0 38 ................................... CATGTCGGCGACCGTACGGGTGCCGCTGCGGCCGGTTC 30389 35 100.0 38 ................................... CCTGGTCGACGTGCTGTTCTTTATCTGCCAGCCATCCG 30462 35 100.0 37 ................................... CAGGTCTTCCTGTCTTTTGCTAGGATGCCACCAACTA 30534 35 100.0 37 ................................... CCGAACCGCTCCAAGTCATCCCACCATTGAGTCCGAG 30606 35 100.0 37 ................................... CGTCGACGACGTCGCCGTGCCCCTCGCCGGGACCGGG 30678 35 100.0 38 ................................... CTCGTGGCGTTCCGCTCGCCGGTGCACTCACTTTTCCG 30751 35 100.0 37 ................................... CATGATCGAGGCCAGATCGGCGAGCACCTGCTGGCGG 30823 35 100.0 37 ................................... CACCCGCGATGAGATCGCCACCCACTTGCCGCGCGCC 30895 35 100.0 40 ................................... CGCAGGAGATTCCGGGTTGCCACTTTGAGTTTAACGGCGA 30970 35 100.0 36 ................................... CCAATTCTACTCCAACAACAATCTGTCTCCAGTCTC 31041 35 94.3 0 ......A..............T............. | ========== ====== ====== ====== =================================== ========================================= ================== 67 35 99.9 38 CTCTCCGAGGCTGAAGAGCCTCGGCCTCATTGAAG # Left flank : CTGTCGGTGTTCCAGTGCCGGCTGGCGCGCCGGCGCCGGGCCGAGCTGGAGACGCGGCTGCGCGAGCTGGTGAAGGCGGGCGAGGACCATGTGCTGATCATCGATGTCGGGCCGGCCGACCGGATCGCGCTGGCGATCGAGAGCATCGGCAAGAGCTTCGCGCGCGTCGAGCGGCAGGCGACGGTGATATAGCAGGGTGACTGGGCTGGGCTGGGCCTGGCCGAGCCGGCGGGGCAGGGCAGCTTCCGGCGAGGTCGGCGGTGGATCGGGCGGTGGCCTGTCGGTCCGTGGTCGACAGGCTGCCGGCGCGTTTCGAGCGGTCCAATGGCGCCGCCGGGGCGCAGACCGCTCGAAATATGATAACGTGTTGAGGAGGCTTGGGTATTGGACATCGTGAATACGCATCGCCAGCAAACGTCTCGCCGGTTCTCGCCGGCTGTCGGGGACCGCTCGAAAACGTCGGCCGGACGGAAGCTGGCTCAAGGGCTTGCGGACCGGCC # Right flank : GCGGAGTCCCGAAGCTGGCCGAACTCTACACGCGCGCTTCGAGGTAGAACGCCTCAGGCGCCGCACGCAAACGTCGCCGCCGGCAAGGGCGGCGGCGCGCGCACGCCGCGGCGCGGGCCGTCGTGCCATGCGCTAAGGCCGCGACATCCGCGCGACGCAGGCGTCGTAGGCGGGCGTGCCGGACGGATAGCCCTGCCGCACGCAGGTGTCGCTGGCGCTCGGGGCCGGCGTCACGACGGCGGGGGCGGGGGCCGGCCGCGGTTGCACGACCTTCTCCTCCTTGTAGGAGCACGCGCCGAGCACCGCGAGAATGGCAACAGCTGTCAGAAGACCTTTGGCTGGCATGGAATACCTCCTGCTGGGCCGGTCACGGGCGGTGCGTGCGCGAACCTTCCAGGCAGTCCCGGAGAGGCGCCGCCCGCGCCCGTCGTTGATGACGATCACCTGACGAGAACGAGCCTGGTGCGGGCATGTTCCCGGCGCTGCGCGCCGTCACACCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGAGGCTGAAGAGCCTCGGCCTCATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //