Array 1 2386661-2385045 **** Predicted by CRISPRDetect 2.4 *** >NC_013967.1 Haloferax volcanii DS2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2386660 30 100.0 36 .............................. GAGGAAAGGTCCGAAGATGCCCTCGAATCTCAGAAA 2386594 30 100.0 36 .............................. GAGGGAACGCACGTCTGCGGCGACTTCGAAGTCACG 2386528 30 100.0 35 .............................. CGGTCGACGACCGGTTCATTGGTTCCACGCCCCCA 2386463 30 100.0 36 .............................. ATGCCCGACCTCGTCCGAGACAACATCGTCGACGTC 2386397 30 100.0 35 .............................. GACGGCACTGGCGGCTATGGGAGCATGCCGAACCC 2386332 30 100.0 35 .............................. ACAGTTAGTGGGGTCTTTGTGGAGACCGAATCCCA 2386267 30 100.0 34 .............................. ATATCGCTCACCAGCTTCCATCCGAGTCGTTGGT 2386203 30 100.0 37 .............................. TTTCAACGTCCATTCTTTCGATAATCTCGTAAATCGT 2386136 30 100.0 35 .............................. GCGGAGGTCGCTGACAGCAACGACGGTATCGAGCG 2386071 30 100.0 36 .............................. AAAATCCTCGATTACTACGAGATCCCACGGAAGATT 2386005 30 100.0 37 .............................. GTCCTCGCCCTCCGGGGCCATGTATTCCTCGAACACC 2385938 30 100.0 36 .............................. GCGTAGGCGAATGTCAGCGCCGTGATGGCGACGCGA 2385872 30 100.0 34 .............................. GACATCCGACTGCGACAAGAGACTGAACACGGTG 2385808 30 100.0 37 .............................. ATCGAGTTCCGCATCGACGCCGACAGCGCATCGGACG 2385741 30 100.0 37 .............................. GTCGAAATCCCCGCCGGAGCGAACGACCTCGACACCG 2385674 30 100.0 37 .............................. ACCGCACTTGAAGCGGTTGACAACTCGGGGGCAGCGG 2385607 30 100.0 37 .............................. AATTTTGCAAATGTTGTCGACACCTCAAACGACACGC 2385540 30 100.0 36 .............................. TGGATAACGCCATGGCGGTGGGCGACGGCGAAGACT 2385474 30 100.0 39 .............................. CGGATCGTAGACGTAGATGTCCAGGCGGTCGGCGTCCGA 2385405 30 100.0 37 .............................. CGCCTATCGAGTGCTTTGCGAGGGGCGCGAGGAAAAG 2385338 30 100.0 36 .............................. GGCCGTCGCGAGCGCTGGCTCGGTGGCGGTCCGACC 2385272 30 100.0 34 .............................. TCCGTCGACGGGACTGCCCAGGCGCTCATGCAGT 2385208 30 100.0 38 .............................. GCTCATGCGTCGACACCTCCGCTCGGGTGGTTGCCCGC 2385140 30 100.0 36 .............................. TCGACTAACGTGGTCTCGTTCGGCGGCACGGTGGAT 2385074 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TCCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCATCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCGCCTCGAATTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACATCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCTGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGACTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 204975-207584 **** Predicted by CRISPRDetect 2.4 *** >NC_013966.1 Haloferax volcanii DS2 plasmid pHV4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 204975 30 100.0 37 .............................. GCAGGCATCTCGACCGGCGACCTCCCGGAACACTTTG 205042 30 100.0 37 .............................. TGCACAAGTCCATCAAAGAAGACGGTTACACGCAACC 205109 30 100.0 35 .............................. GTCCTCGACGAAGCCGGGGTCCAATTCGGGAACCG 205174 30 100.0 37 .............................. GCGACCGGGCCGAACGAAACCGCGCAGAACATCACGG 205241 30 100.0 36 .............................. AGGACACGTCTGCGCTGCGTGCGCCTACTGCATGAG 205307 30 100.0 36 .............................. GCGCACGCGTAGGCCCCGAGCACGAACGCGACCGGG 205373 30 100.0 37 .............................. TGATTCTCGAAGGAGCCGAGCGCGGCTTCCGTGGAAT 205440 30 100.0 35 .............................. GTGAAGGTCAAACGCTTCTGGTAGGCAGGCCCGCG 205505 30 100.0 36 .............................. AGTCTGCGGTCCCGGCGTTGTGAATGTGAACGACTT 205571 30 100.0 35 .............................. GCCGATTGCGATATTTTTCAGAATCGGCGACTGTT 205636 30 100.0 37 .............................. GGTGTCCAAATGTCGCCAGAGAATTCCTGTCAAGCTT 205703 30 100.0 37 .............................. TGACGCTGTTCGATGTCTTTCAACTCGTTTGTCTCTC 205770 30 100.0 35 .............................. GGCCTCCGCGGCGGGCGGTAAAGCCGATTCATCCT 205835 30 100.0 35 .............................. GACGGTTCCGTTCTCGTCGTAGATCGTCACGTCCA 205900 30 100.0 36 .............................. GCGCGACAGAGCCCGTCGAGATCTCCGAAGGCGAGA 205966 30 100.0 37 .............................. TCTCGGCAACAGACCCTGCGTTAGTAATTTGGACACT 206033 30 100.0 36 .............................. AGATTGTGGATGAACGTCACGCCAAGCCGACCGGGA 206099 30 100.0 37 .............................. GACGAGACGATCGGGCTTCTGGAAGACCAGGAGGAAG 206166 30 100.0 34 .............................. TTCAGCGACTACGACCTGATGCGCTCCGATACAG 206230 30 100.0 37 .............................. ATGATCCGCGTGGTCCGGTTGACGTTCGGCTGCTCTT 206297 30 100.0 35 .............................. TATCACCCGTGGGCCGGTGACAACGAGGACCACGA 206362 30 100.0 35 .............................. ATTTTGCCGGACGCTTCGGGAGTTGATTCATAGTT 206427 30 100.0 37 .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGA 206494 30 100.0 36 .............................. TAGTCCGCCCCGCACTCAGGGCACGCGTCGTCGTCC 206560 30 100.0 36 .............................. TGCGCGTGCAGCTCGTTTGATGAGACGTCACCACCG 206626 30 100.0 36 .............................. GAGGGCGGGGGCAACGTCGCGGAGATGCAGGACCTC 206692 30 100.0 37 .............................. GAGACGATTGAGTGGGGCGGTGACTCCGCTATGGCAG 206759 30 100.0 38 .............................. TATTACAATTGCCAAAAACCACGTTGCTAATAGCTCCG 206827 30 100.0 36 .............................. GGGAGTGTATGCGATATCCCTTAAAACCCCCTACTT 206893 30 100.0 36 .............................. ACTCGTCGCACGTGTTAGTTTTCGGTTCGCTCGTTT 206959 30 100.0 36 .............................. GGCGGGCTCGGCAGGAGCTCGAAGACCGCTTTTCGG 207025 30 100.0 35 .............................. ACCGACGATGTAACTGTCTCGGCGGCAACGCTCCC 207090 30 100.0 36 .............................. ACTCTCCGCGTCCGACTGCTCGACATCCCGACATCG 207156 30 100.0 36 .............................. ACCGCGAAATCGGCGTCAATCGTCACGTCCGGTAGG 207222 30 100.0 36 .............................. CACTCTGCGAAGCCGTCGATGAAGTCCTCGAACTCC 207288 30 100.0 35 .............................. TTTTCTACGAGGTCGGAAACGGACACTTCGACGTT 207353 30 100.0 37 .............................. TCGAAGCCGCAGACGACGGCGCAGAGAGCGGTATCAC 207420 30 100.0 36 .............................. CGGCTCGACGACGATTACTTCGCGCTCGAAGCTCGT 207486 30 100.0 39 .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGATG 207555 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TTCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCACAACCGGCCGACTGAGGCCGGTGGGACTCTCGGTTGATTTTTCGCACCGCTGGTCGTGAGGAGAGGAGATTCGTTTCCGTCGACCCTCGGGGGGTACGGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : TCTAGACGGCACTGTCTCGGAGGGTGTGTCAAATTCACTGACAATAGAATAAAAACGTCGGCAACCAAGATGGAGGCACGGACATGAGGCCCCTTGCCAAGTGATTTTCAGGAGAACCGCCCCGGATTGAAGCAAGTATTGACAAGGGAAACCTCATGACACCCATCAGCCGAAGCGACAAACTGGGTGAGCACAGACGGTTCTCAACCGCTCGCGCGCGCTCCAGAAGTTAGTCGTACGCGAGAAGTTTCGCGCCATCGTTCTATTCATGATAGACATTGTGATATTTTGGATTAGCTACAAGTACTGACAATGAGAAGTGTTTTTCGTGGCACACGATCACACAACTTTGAGAGGGGTGATATGAGGCGTGCGTATAGAATTAGCGCTCGATGCCGTTGCTGATGCGGCCTACGACCGGTCTTATTTCCATAAGGCACGCGGACGCATCTGGCGCGGCCTCGAGAACGACGACACGTTCTCGGAGACCCACGATTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 217813-218566 **** Predicted by CRISPRDetect 2.4 *** >NC_013966.1 Haloferax volcanii DS2 plasmid pHV4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 217813 30 100.0 38 .............................. TCGGGGTGGACGTTCTGCCGGGCATAGGCAATATATTG 217881 30 100.0 36 .............................. GAGCGGAGTCGATGGAAGCCGAGACGGAACAACTGT 217947 30 100.0 34 .............................. TCGGTGGTGTCGCGTATCGAATCACACGTCTGTG 218011 30 100.0 37 .............................. CGCTGGCGTCCGAGTAATTACGCCTGCCCCGAGTGCG 218078 30 100.0 36 .............................. AGCACCTCCGTGGGAGTTGTCGATTCTATCGAAGCG 218144 30 100.0 35 .............................. TGCTAGTCGGACCGAGGGAGGAAGCCTCTCGGATC 218209 30 100.0 37 .............................. GACAACGTTCGCCACCCCGAGACGGGTAACTTCACAG 218276 30 100.0 35 .............................. TGTGGGGAACAAGCAATAGAGGACTTTGAAGGATG 218341 30 100.0 35 .............................. CGTCCGGCGACCCGAATATGTCCGTCCCCGTGCGG 218406 30 100.0 37 .............................. GGCGACAACGACGGCAACCTCGAAGTCTGCGCCGCCT 218473 30 96.7 34 ......................G....... GGCACCTACGACCGCCGCTACAACGACGACCCGC 218537 30 80.0 0 .......G......TG......A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.1 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Left flank : CTGACCGGCGAGCCGTATCACGCGACGGAGAAGTGGTGGTGAAATGCAAGTTATCGTCGTCTACGACGTGCCCGCCAAGAGGACTCGCATCTACCGTAAGTTGCTCCGCCGACGTTTGGAACATCTCCAGTATTCGGTCTTCTTCGGTGAGCTCACAGCAGGCCAAGTTACTGCGATGAAAAATGAAATCGAATCCGAACTCGAACCGACGGATTCGATTGTCGTCTTCGAATTCGACAACCCTCATGCGTTCGACCACACGACGTTCGGGGATGCGGACGAACCGGGGAGTCGGTTTACCTGAACTAAGGCACCACCTTGACAAGCGAACGGCGTCAACCGTGAGCGAGTCGGACGAGCGCGTTCGTCCGATCCAGTTCTCGAAACACAGATACATCATTTCCGTCGACCCCCCGGGGGGTACAGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : CGAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGGGTGGTCACGATGGCGTTTCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGAGGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGCCCCGGCGTCGATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //