Array 1 100243-101115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNZG010000002.1 Vibrio parahaemolyticus 10290 isolate 20556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 100243 28 100.0 34 ............................ AATAATAAACCCATGTTCGGTAAATGACTTTCTA 100305 28 100.0 32 ............................ ATTCACGGGCGCAAAGAATAACGCCTTTCTGA 100365 28 100.0 33 ............................ CGAAAAATCAGTTTTCTGTCAGCTTATCGATAT 100426 28 100.0 32 ............................ TTGTATGCTGGTAAACAAAAATTAGCTAATTC 100486 28 100.0 32 ............................ GCGCGAAAACTTGTAAGTGATAACGACGGAGT 100546 28 100.0 32 ............................ CATTCGGTTCTTCTTTTTGGGGGCCTGTTGTT 100606 28 100.0 32 ............................ AATTTAAAAGATAATAAATCCCGCGTCAATAA 100666 28 100.0 32 ............................ AGCACAATGAACGCGGCCAACATCAACATAAA 100726 28 100.0 33 ............................ GATAAAACGCCAGATTCAACAACTAACTCATAT 100787 28 100.0 33 ............................ GAACAGCAATGGGAAGTGTTTAATACTTTATCT 100848 28 100.0 32 ............................ CCATTGAGTATCCATCGGCAAGATGAATCGAG 100908 28 100.0 32 ............................ ATCAAGTATTGAAATATCACCTAGCGCTGGCG 100968 28 100.0 32 ............................ TTGCCTCTACACTCTGAGATTATTTCGCCTAA 101028 28 100.0 32 ............................ TTTTCCGTTTAATGTGATTTCGCTTTTTGTTA 101088 28 92.9 0 .............C............G. | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATACTATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATATGAGCTTGAGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 86930-86724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNZG010000017.1 Vibrio parahaemolyticus 10290 isolate 20556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86929 28 100.0 32 ............................ CCCAACATTAGCCTGCTTACCGTTGCCAGATA 86869 28 100.0 32 ............................ GAGATACCACAGGCTCAAGCAGATGCTAACAG 86809 28 100.0 31 ............................ AGTCGGTCAACTGAGAATACGTTGTTGCCAA 86750 27 85.7 0 ...........C........A-..G... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTGAACTGCCGAATAGGTAGCTGATAAT # Left flank : CAAATGACAAAACTTGGTTACTTTAGCATTTCCACAACACAAACTGTCCCAGACGATTGTTCTTATGTTCTATTTAAACGTGCACACTCTATAGATAAAGGAACATCTGCGGGCCGAGCGAGGGAGTTAAAACGACTTGAGCGAAGAGCTTTAGAACGCGGCGAAATATTTGACCCTATAGCTTATTCCAAAACCACTAGTCATGCATTCCAAAGCTACCACTCACTGGAAGAAGATAGCAGCAGTGGCAATAAGTTCCGACTGAATATACAAATGAAGGAAAGGTCAGGAACTGTAGGTACTGGAAAATTTAGCAGCTATGGGCTAGGCAATACCGATAATTCATTGCAGGTTGTTCCTTTGATTTAACCTTACATCTACACCATCTTCATAACCTATTGATTTTACAGTCTATAATGTAGCATTAAGTTTAAAAGGGTAAATTCGTAGAAAAACCATTAACTAACTGATATTTATGGACTATTATTACATTGGTAATA # Right flank : CAGTTTAAAAAATCAATACTATTACCATCTCCAAACAGCTAAATTCTTAGCTGTTTGCTTTGGCATTAAATGGGGGCTATAATCCTCATTACTACTAAAAAGTAGCTGATAACAAATTTACATCTCCAGGCTCAGCCAAAAAGCGAATACTGCCGAACAGGTAGGAGGCTCAGTCAACTAGAGTAAATGAACTCTTCCAATCTATTTATGGTAGAAGCTCTCGAATATCGCACTGAAGGACACTTGCTATCTGGTAGGCTTTTTCTAGTGTGATATTCACTTCACCTCGTTCTATCCTGCCTACGTAGCTACGATCTATATCTGCAGCCAAAGCCAACTTATCCTGTGATATTCCTTTGTCTTTTCGCATAGAACGAACGTTGTAGCCAAACTTTTTTGCTAAGTCTCTCATTTCAAAAGTACATTAAAAAGAAAGACTATCTATTCTTGAAGAGAACTTTTCCACGGACTATAATCCGCATTTATTTTTCTATGTTCAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGTAGCTGATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //