Array 1 91534-94028 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNOH01000002.1 Escherichia coli strain FH134 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91534 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 91594 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 91654 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 91714 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 91775 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 91835 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 91896 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 91956 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 92016 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 92076 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 92136 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 92196 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 92256 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 92316 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 92376 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 92436 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 92496 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 92556 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 92616 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 92676 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 92736 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 92796 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 92856 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 92916 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 92976 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 93036 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 93097 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 93157 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 93217 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 93277 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 93337 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 93397 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 93457 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 93517 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 93577 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 93637 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 93697 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 93759 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 93819 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 93879 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 93939 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 93999 28 85.7 0 ....................A...C.CT | T,C [94019,94023] ========== ====== ====== ====== ============================ ================================== ================== 42 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 103087-103936 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNOH01000002.1 Escherichia coli strain FH134 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 103087 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 103147 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 103207 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 103268 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 103328 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 103388 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 103448 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 103509 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 103569 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 103629 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 103689 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 103750 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 103810 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 103909 27 85.7 0 ...G...A...............-C... | T [103929] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //