Array 1 8372-10019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNRA01000112.1 Vibrio parahaemolyticus strain A1_9 A1_9_contig112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8372 28 100.0 32 ............................ ACGCGGGTTTGACGGAACCACATGCGCTCAAT 8432 28 100.0 32 ............................ AAGATGAGCAAAGGTAGGCCAGTAGTAATCCA 8492 28 100.0 32 ............................ GTGCCTACCTCGTTGGATGTATGGCACTATGC 8552 28 100.0 32 ............................ TAATCGCGTTAGCGGTCTATTCAGAAGCTCCG 8612 28 100.0 32 ............................ TAATCGCGTTAGCGGTCTATTCAGAAGCTCCG 8672 28 100.0 32 ............................ CATACATACGCTTTTTCAGTATCATCCCACTT 8732 28 100.0 32 ............................ ATTACTGACACTGCTAATTCAGCCGCCAATGT 8792 28 100.0 32 ............................ TGATGACTCTACTGATTACTTGATTCCCGTTC 8852 28 100.0 32 ............................ CATACGAGCATCTTGAGCTTTTAACCACGCCG 8912 28 100.0 32 ............................ AGAATCATAAACCAAGCTTCCGCCCTCCGATT 8972 28 100.0 32 ............................ TTCACACGAGCCGCATGGCCAACTAACAAAAG 9032 28 100.0 32 ............................ CAAGTGAGCGAACGCAGGCCAATAAAAATCAT 9092 28 100.0 32 ............................ GCTCAACAGGCTATTGAAGAAGAGCGCCGCAC 9152 28 100.0 32 ............................ AAGCAATTATCATCGCGACTAAGATGATTTAG 9212 28 100.0 32 ............................ CAGGCAGACCGGCTTTAAAAACAGAATTAGGT 9272 28 100.0 32 ............................ GGACAAAGTCCGCCAACTAGCGCGCTAACGCT 9332 28 100.0 32 ............................ TGTCGACTTGTCGTTCGACTCCATCTGTTCGT 9392 28 100.0 32 ............................ AGTTATTGAAGAAATCGAAGATGATGAGGAAT 9452 28 100.0 32 ............................ GCTATGAGTTCGTTGGCTTATAATGGCGTCAC 9512 28 100.0 32 ............................ TGATTTCGTGGCTGATTTCCACTTCGAAAACT 9572 28 100.0 32 ............................ AAAAGGCCAAGGAAAACAACTACTCCAAATGA 9632 28 100.0 32 ............................ TTGGTGAGCAAGCCATACTAAATCGTGAGATT 9692 28 100.0 32 ............................ TTGCGTATAGCGAATTAGATCGCCGTGGCATG 9752 28 100.0 32 ............................ ACGCCACCGTCACCCACATCAATTGATGGATT 9812 28 100.0 32 ............................ ACACAGAAACAGAAAAAGCGGATATCAACCTA 9872 28 100.0 32 ............................ TTGTGCAGAAAATTTAAAGATACCGCAACACT 9932 28 100.0 32 ............................ GTCTTATGACTTTATCAACTGTTCCTGTTTTG 9992 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : CGAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGACTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATTGATGGTGTTTAACAAGGTAGAAACATGATTTTTATCTTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTAT # Right flank : AGATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGTTAATAGAGTTTTAGTGTTGTTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //