Array 1 2813163-2811244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTF010000001.1 Escherichia fergusonii strain RHB25-C08 RHB25-C08_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2813162 29 100.0 32 ............................. GCTATGTGCATTCTATTTGTGAATATGTCCGC 2813101 29 100.0 32 ............................. GGGTACACGCATCGCCCTGGATTCAAATATTG 2813040 29 100.0 32 ............................. CGCCGCTTGAAAATTACACACCGGGTTTTTAC 2812979 29 100.0 32 ............................. CCCGCTGGTTATTGTGGTTAATGTCATGGTCG 2812918 29 100.0 32 ............................. GGCGCGGTACGCAGTCAGCGTTTACCAGTCTG 2812857 29 100.0 32 ............................. CCACTGGATCACCCGGTGATTGATGGGGAAAA 2812796 29 100.0 32 ............................. CAACTGGCGAAATACAGGACGAGTGGAAATTC 2812735 29 100.0 32 ............................. TTTTTGCAGCACCGGCACTGGCTGCGGCGGCC 2812674 29 100.0 32 ............................. GTATAAATAATACCGAAAATTTGCTCGTTTGC 2812613 29 100.0 32 ............................. CGCCAAAGCCAAGGCTTTTACACTTTGTCAAA 2812552 29 100.0 32 ............................. CAAAAAACAGGTTGGATGGCGGTACTTAGGGC 2812491 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTAGCGTGACCCGGCTC 2812430 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 2812369 29 100.0 32 ............................. CCGGGGCTTATAAATGTACTGTTACTGATGCC 2812308 29 100.0 32 ............................. GCTGATTCTCGCGATAAATTGCGTAACCGGGT 2812247 29 100.0 33 ............................. ATCGGTAACTACGGCACAAAACAGGAGCACAGC 2812185 29 100.0 32 ............................. CTAATTCGACGCTGATTACCTGGAACGGCTGC 2812124 29 100.0 32 ............................. GTATTCACTCGACTCTGACGGAATCATGAACC 2812063 29 100.0 32 ............................. CATGATTTTCCTTATTTAACGTAAGCGGAGTT 2812002 29 100.0 32 ............................. TCGGGGGAACAATCCCCGCTGGCTCCTGGGGG 2811941 29 96.6 32 .G........................... GCGCAGTTTGCGTGTGGCTGAGAAATAAGGAA 2811880 29 100.0 32 ............................. CCCGGAGTGCGGAAACAGACCAGAATACGCGC 2811819 29 100.0 32 ............................. AAAAAATTATTAATTCTGGTGGCACTGGTCGT 2811758 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 2811697 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 2811636 29 100.0 32 ............................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 2811575 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 2811514 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 2811453 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 2811392 29 100.0 31 ............................. CTGCTCATTGCCATTGCCCCAGAATACCAGC 2811332 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 2811271 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2831260-2830743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTF010000001.1 Escherichia fergusonii strain RHB25-C08 RHB25-C08_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2831259 29 100.0 32 ............................. TTTTTGCCGTTCTTTCGCGTGCGCCGGGTGAC 2831198 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 2831137 29 100.0 32 ............................. CGGGCGTTCAGTTAATTTAACAATGAATATGA 2831076 29 100.0 32 ............................. CAGATCAGATTTTTGAAATGCTGGGATTGCAG 2831015 29 100.0 32 ............................. AAACCAGCAGTGGGTAGTTAAAATTCGCAAAC 2830954 29 100.0 32 ............................. AGGATTTGTTCTGCGATGAATAAATCAACAAT 2830893 29 100.0 32 ............................. ATGCTGATTGCTTTTTTAGATGTCAGCCCAGA 2830832 29 100.0 32 ............................. GCCTCATTCCTCGCGCTAATAAATTCTGGATT 2830771 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GGTTAGGAATTGCGAAAGCTGGAACTCAACAGTAAGCGTGCAGTGAGAACCGTATTGACGAAGTGAAGCTGGTCAGGCAGGCAGAGTAACCCGCCACGGGAGCAGAGCACCCACCCGGTTCACAGGCCAGTCGGCGATGACATCAAGTACATGATGCAGATAGCGTTCCGGATCCACGCCGTTTAATTTGCACGTCCCGATAAGACTATACAGTGACGCACCGCGCTCACCACCATGATCCGAGCCGAAGAACAGCCAGTTTTTTCTCCCCAGACTGACCAGTCGTAGGGCGTTTTCGGCAATGTTATTATCCACCTCCACCCAGCCATCTTCTGCATAGCGGGTCAGCGCCGGCCACTGGTTCAGCGCATACCCGAACGCCTTCGCCAGTTCTGAGTGCCTTGAGAGGGTTTTCTGTTTCTCCCGCAGCCACCCCTCCAGTGACGCCAGCAGCGGCAGCGCTTTTTGGTGCCGGACTGCCTGCCGTTCCTCTGCTCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //