Array 1 2195222-2195615 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPTY01000001.1 Klebsiella pneumoniae strain NICU_3_P1 Chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2195222 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 2195283 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 2195344 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 2195405 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 2195466 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 2195527 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 2195588 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2204368-2205618 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPTY01000001.1 Klebsiella pneumoniae strain NICU_3_P1 Chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 2204368 28 100.0 33 ............................ TCCTATTTACACAGTACCTGGCGCGCCAGGCGA 2204429 28 100.0 33 ............................ TGTCGATAAAGTCGAGCTCGACGTCGACGCGCT 2204490 28 100.0 33 ............................ CAAAACCGAAGCGCTGTCACGCCTGAAAGAGCT 2204551 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 2204612 28 100.0 33 ............................ TAGCTTTTAAGGGGAATAAAAAGCCCCCGGGCG 2204673 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 2204734 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 2204795 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 2204856 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 2204917 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 2204978 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 2205039 28 100.0 33 ............................ TTCTGAATAAATCAGCGCGTCATAGCCGTTATC 2205100 28 100.0 33 ............................ TCATACTCATTGGTGCAACACGGTATCCACGTA 2205161 28 100.0 33 ............................ CTCACCAGCTCTGCGGCCTTCTTGCGATACCGC 2205222 28 100.0 33 ............................ TAAATGAGGCTAACTGGACGCAGCGAGAGAACG 2205283 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 2205344 28 100.0 33 ............................ CGACTGGATCACGTACCTGATCAGCGTAGTGGT 2205405 28 100.0 33 ............................ CACTGGGGTAACTGGGCATTCAGCCCGGCCGAG 2205466 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 2205527 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 2205591 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 21 28 98.1 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //