Array 1 47968-48428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFL01000027.1 Gallibacterium anatis strain SV200 GaSV200jloContigNoc27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 47968 36 100.0 34 .................................... ACTGTTTAAGTAACTGCAATTTTGCTTCTGAGTA 48038 36 100.0 34 .................................... TGTTATCCCCACCTCTAGTAAAGCCCGCTCAAGA 48108 36 100.0 34 .................................... GAACTGTTTCAATAATTTGAGTTTTGCTTCTGAA 48178 36 100.0 36 .................................... CCGTTAAAAAATCTATTCTCTCGCGGGCGAAAATTC 48250 36 100.0 36 .................................... ATTGAGGATTATTTCAATATCACGAATGTCATCACG 48322 36 100.0 35 .................................... CCTCAGCATCTTCTGCTGTTCCATAAATACGATAT 48393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 100.0 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGCGTCGGGA # Right flank : CTTTTTAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 47-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFL01000034.1 Gallibacterium anatis strain SV200 GaSV200jloContigNoc34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 47 36 100.0 37 .................................... AGGATTTTCCCTAGCAGCTGTTCTGTCGTTATGTTGT 120 36 100.0 34 .................................... TTCTAAGTTAAGGCGTGCAGGGTACTCCGCCACT 190 36 100.0 34 .................................... ACTAGTGGGTCGTCTTGGCAATCTGAATCGTATT 260 36 100.0 36 .................................... GTGTATCGGCTGGACGCTCCTTGATGTATCGTGCGG 332 36 100.0 36 .................................... ATTTTACGGCGTTTGATACCCATACAAGCCCCCTTA 404 36 100.0 36 .................................... TTGAGTCATCGTCTACGTATTGGTGCAGGCGGTTCA 476 36 100.0 36 .................................... GTTACCTGTGAGATATGGTAACTCAAAGGTTATTAT 548 36 100.0 38 .................................... TATTCATACCCCTCGGCATCTTCTGCCAATCCGCATAA 622 36 100.0 36 .................................... CTTGAAAAAAGCCTTTTATTAATCGGCATTGATACA 694 36 100.0 36 .................................... ACTCGAAATCCTCATAAGTCATCGCATCTTTACTAC 766 36 100.0 35 .................................... ATAATTGCAGTTTTGTTCAGCTGCGATTTTAGCTA 837 36 100.0 37 .................................... GATGGTGCGTAACAGGTTATCCTAGATAACCATCTAG 910 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 13 36 98.9 36 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GATTGAGACATTCTCCCGCCTTATCGCTCCATACCCACCAACCAAAG # Right flank : TTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAATATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAAGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28191-27024 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFL01000016.1 Gallibacterium anatis strain SV200 GaSV200jloContigNoc16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28190 28 100.0 32 ............................ TAAAGGGATTTTGCCGGAAAACGAGAACGAGA 28130 28 100.0 33 ............................ CTATTAAAAATAACGTTTAAAATTACATTTTTT 28069 28 100.0 32 ............................ CGGAACTTTTAGAGGCGGAGGGTAAGTTTCAA 28009 28 100.0 32 ............................ TATAACGGCTTTCTCTAACCTTTTTCCAATTA 27949 28 100.0 32 ............................ GCTAAAAAAATCCCTTTACGTGCCTAGCTAAA 27889 28 100.0 32 ............................ AAGAAGTATATTTATTTTCGCCCGACGGTTAT 27829 28 100.0 32 ............................ GAAATGAGTATTGAGCGTGCAGCTAAAGAAAA 27769 28 100.0 32 ............................ ACTTATATCGGCAACATAATTTTGTACGTAAT 27709 28 100.0 32 ............................ ATATCTTTAAATGCTTTATTGCCATTAATATT 27649 28 100.0 32 ............................ TTACCGCTTCGGGTTGGCGCGTCGAGGTACAG 27589 28 100.0 32 ............................ AACCGCTACGGTTGTGTTCGTGCCGTTAATGA 27529 28 100.0 32 ............................ TTTTGCTGCTTTTTGTGTTCAGGACATCATTG 27469 28 100.0 32 ............................ AACACGCATTCCGCTATATAACAAGATCAGTG 27409 28 100.0 32 ............................ GACCGCTATGATTGCGAAGAATATTATGAATG 27349 28 100.0 32 ............................ GCTAGCAAGTTAAACATTGCAGGATTAGATTT 27289 28 100.0 32 ............................ GGATGAATTTTTTATTGCGCAAGAGCCTAAAT 27229 28 100.0 32 ............................ ATCACGACACAAAGTCAAACTATCGCAAGTCT 27169 28 100.0 32 ............................ TGTTGTTTGACGAGCTATTAACGCATAGCACT 27109 28 100.0 30 ............................ ACGGGAGGTTGTTTTTTTGCTCGTCCGCCC 27051 28 75.0 0 ..............GAAA.TT...A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACATCTAAAAAAGGGTTTTTATCTTAAAATGTTCTTTAACAATTGACTTTCCTTATATCATAAGGTATTCGTGTCTA # Right flank : ACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCCTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTATCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTGTCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGTGAACAATGCGAAGTCAATTTCGCATTTTCCGTACGCCAATAACCATTGATATAATTTGTCTTTTTGTTATGGAACATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //