Array 1 54715-53771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBO010000017.1 Escherichia coli strain ZH55R-A NODE_17_length_101284_cov_245.909957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54714 29 100.0 32 ............................. GTAATTATCAATCAATATAGAATATATGTTGT 54653 29 100.0 32 ............................. AAAGAAAAAGACGTTGCCAGCATGTCCGGGCG 54592 29 100.0 32 ............................. CGGAAAAACTTATTAACCAATATGCGGTGACG 54531 29 100.0 32 ............................. GTTGGGTAAGAAAGAAAATTTTTTCCCACACT 54470 29 100.0 32 ............................. ACGGGCCAATCTCAACGAATATACGACCTCAA 54409 29 100.0 32 ............................. GCCAATAAAGGAAAATCAGTAGCAATACTGAA 54348 29 100.0 32 ............................. ATGACGTCACTGTTGCGGCGGGTAAAAAAATC 54287 29 100.0 32 ............................. GCGGCGCGCACAAACGTTACTGGCAGAACTGA 54226 29 100.0 32 ............................. CCATCGAACTGGACCGATTCTTGCGTTCTGAT 54165 29 100.0 32 ............................. GCAGCTTGTATGTGCAGCTTTTGCAATTGCGC 54104 29 100.0 32 ............................. TATTTCATCACCCCGGCAAAGGCTTTATAGAA 54043 29 100.0 32 ............................. CCTCACAAATCATTAGTCGATTTCGTAGCGCG 53982 29 100.0 32 ............................. AAATTATTCATGCCGCGGGCCTTGAACCCTGC 53921 29 100.0 32 ............................. CAATGCGCCCCCACTGTCCATCCCGATACAAC 53860 29 100.0 32 ............................. GTCAGGCATACTTGCGGCATAACTTAGATCAA 53799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTATTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAACTCCCAACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTGCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80892-79888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBO010000017.1 Escherichia coli strain ZH55R-A NODE_17_length_101284_cov_245.909957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80891 29 100.0 32 ............................. TTATACACCGTATCACCCTGATTACGGATACA 80830 29 100.0 32 ............................. ACACCTAAAACAATTGCTGCTTTTTTCATTAT 80769 29 100.0 32 ............................. AAAAGCCGTTCCCCGCCCTGTTTGACGCGTTC 80708 29 100.0 32 ............................. CTTAATTATCGCCATAAATTATTAACAAGCGA 80647 29 100.0 32 ............................. ATCAACTCGCTAACGTATATCGTGGAGGGTAA 80586 29 100.0 32 ............................. CTGAGCGTTTCCCGGAATCTAAAGCCCTGAAA 80525 29 100.0 32 ............................. GTTACTTGGCGAATTGATAGATAAAGAACTGC 80464 29 100.0 32 ............................. TGGACTGGATGCCGGAAAAATTCCGTGTTCTG 80403 29 100.0 32 ............................. CTCATACCAGAGAGTAAGATCGCCGTCGTGCA 80342 29 100.0 32 ............................. AAATATCCAGGGCCGGGCTGGAGGCAGACGGC 80281 29 100.0 32 ............................. ATTCCGGGCGCTCCTTTTTCTGAGGCTGTTTA 80220 29 100.0 32 ............................. ATCACTATCGAGCGCGACGGTAAAACAATAAT 80159 29 96.6 32 ............................A CTAAGGCGTCCGTTAAAGAGGAAGCGAAAGCC 80098 29 100.0 32 ............................. TAATGGTACTGCGGATGGCTGCAACAATGGCA 80037 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGATGCGCCCAGG 79976 29 100.0 32 ............................. CGCGTGTCTTTTATTGTGTTCAGGCGGTGTAA 79915 28 93.1 0 .........................-..A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTTATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCTGGACTAATCATTGTCATTCTCTACAAATTCTGTGGTGTTAATTTTTCTCTGGGGTGAAAAGTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTAACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGCTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCACCGTATTAATCGCTGCCCCCAGACTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGTTTCGCAAAGTGATTAATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //