Array 1 4209501-4209105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR593888.1 Gemmata obscuriglobus UQM 2246 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4209500 29 100.0 31 ............................. TAGTCCCGGACCTGTTGCTCAGTCGCGAACC 4209440 29 100.0 33 ............................. ATCGACGGCGTGGCGGCGGTGCCCGCGATGTTC 4209378 29 100.0 32 ............................. AATACGTCGACTCTTTGTCGGAACAGCACCGC 4209317 29 100.0 34 ............................. GCCGCGAAGCTGCCGGCGGCGAAGCACGAGACGC 4209254 29 100.0 32 ............................. AGGGCGTCAGCACCAGCACCTTCCGCCTCTGG 4209193 29 96.6 32 ...........................A. GTGGTGGCGGACTGGAGCAGTACGCTGCTGGT 4209132 28 89.7 0 .......A...........T.-....... | ========== ====== ====== ====== ============================= ================================== ================== 7 29 98.0 32 GTGTTCCCCACGCTCGTGGGGGTGAACCG # Left flank : ATCCGCCTTGACCTCGTCGCAGAGCACGATGTCCGAGGCAAGGAACGCAAGCGAGTCCATGCGCTAGTACGGAATGAGTGCCGCCGAGGCGCTCGGGCCGTAGCAGGCGAGGAACAGGAAGGGGAACAGATACTTCATCATCGCCTCCGTGAGGGCCGTTAACAACTCCACAATGATGGTCCGGCCCTCACTGGTCAATGGCAACGACGGTCATTTACGCGTGGCGCCAAGGCCCACGCTCACCCCTCCAGCCCGGCCGCGCGGCGCCCGCACGCGATGCACGCAGCGGACCACGACTGCTCGGCGCGCTCGTGATTGGCCCACACCTTGACATCTCGGTCCGCGGAGCCGGTCCCGGTGTCTTCTTGGTCGGCCTCCAAGAGCGGGTAGATGTTCACGGGGCAGCCGCGCCGCCATGTGCAAACGGATTCGCGGTCCGCACCTTGGTCGAGGCACCCCCACAGGTCCGTGAGTCGCATCCGGACGACCGGATGGGAGGC # Right flank : GCCAATGACACCTACGCCAAATGCGCTCTCGGGGCCGCAGCCTGAATGCCAAGCCCTGCGATTTTCGGTGGTGTCCTGTTCGTCTTGTATGCGGCTACTGATGCGTGGTAAGTAGTTACGCTGTTCGGTCGTGCTTTTCCCTCGCGCGTGTTGGGATCGGTCATGGACGATCTGAGTCGGTTCTGTTGCCGGAATGCGGATTGCCCGGACCACGGGAAGCGGGGGCACGGGAACCTAACGGTGCCGGCCCGATACGGCCCGAGCAACACCCGGGTGCTGCGGTGCTCCACGTGCAAGGCCCGGTTCTCGGAGCGCAAGGGCACGCCCTTGTACGGCACCCGGTTGTCGGCCCAGACGGTGACCGCGGTGCTGGCCCATGTGGCGGAGGGATCCGGCACCCGCAAGACGGCCCGATTGGTCGGGGTACATCGGGACACGGTCACCCGGTACATCCGTCAGGCCGGCGAGCAGGCCCAGCAACTCCACGACGAGTTGGTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCTCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5901772-5894412 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR593888.1 Gemmata obscuriglobus UQM 2246 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 5901771 36 100.0 36 .................................... AAGACGCTCCCGACTGCGGCCCTGTCGCTTCACCCC 5901699 36 100.0 35 .................................... ACTTGGAAACAGCGCAGGTCGTCATCGACCTGCGC 5901628 36 100.0 35 .................................... GCCGTCTTCACGATCGCGGGCACGTCGGCCGTGGT 5901557 36 100.0 35 .................................... CACACCGCCGCGACCACACTCACCGTGCCGGGGAT 5901486 36 100.0 36 .................................... TTGGTGCCGGCCTCGAACTGCGTCACGAACCCGAGC 5901414 36 100.0 35 .................................... GCCGAGTTGTTCGGCCGCTTCGACTTGGCTGACCT 5901343 36 100.0 37 .................................... CCCTCCACGGCGGTGGCGTCAGCCCCGCTGGTCGTGT 5901270 36 100.0 35 .................................... TCGAGCGGGGTCGGAAGTGCGCCGCCGATCAGAAC 5901199 36 100.0 37 .................................... TGCGGCGCGCCGACGCTGTGTGCGCCCAGAACACAAG 5901126 36 100.0 35 .................................... TCCGGGTCCGTGCCCGGAACGCCCAACTCGCATAC 5901055 36 100.0 37 .................................... ACCTGTACAGCGTGCGGCATCGGCCCCGCAGAGCCGT 5900982 36 100.0 34 .................................... AACGTGAAGGGCAAGCTACTCACGTGCGTAACGT 5900912 36 100.0 35 .................................... AGCCGGCCCTTGTACCCGGACCCGCTGTCGGACCC 5900841 36 100.0 35 .................................... GGCCGCGACCGGCGCCACGTCGCCCAGTGACGCAC 5900770 36 100.0 35 .................................... TTCCCGATCACGTCCGCCAAGCTCGCCACCCGGTT 5900699 36 100.0 38 .................................... AGTAACTGGGTATCAATCGTCACCACCGAAGGCCCCGC 5900625 36 100.0 38 .................................... TTCCGGGGCTTGCGGGCACGGGGCTCAAAGTCGAAGGT 5900551 36 100.0 37 .................................... CTGCGTTCAAGCAGCACATTACCCGTGTGATGGGCGC 5900478 36 100.0 35 .................................... CTCCTCTGCGGTGTCCTCGTGCATCGCGTGTGCCT 5900407 36 100.0 36 .................................... ACCACGACCACGCAAGACATCTGGGCGGACGGCGCG 5900335 36 100.0 35 .................................... TTGTATGGCCGCGCAGAACAGGGGATGTCGTACCG 5900264 36 100.0 38 .................................... TTCGGGTAGGACGGCGCCCCGTCCTCGTCCTCGACGGT 5900190 36 100.0 36 .................................... TCGGCACCGACCGGAACCGCGCGCAGGGGCTCCGCG 5900118 36 100.0 34 .................................... ACGGGCCGGCTCTCGTACTTGGCGAAGTCGCGCT 5900048 36 100.0 35 .................................... ATGCACCAAATCGCTTTGGCCCGACCGCTATCCGG 5899977 36 100.0 36 .................................... CCACTTCGCCACGGCCAGCGCCCACGCGGTCGGCCG 5899905 36 100.0 35 .................................... GTAATAGTCCCAGCACTCCGAGCAGCCAAGATATT 5899834 36 100.0 35 .................................... AACAACATCCGCAAGCCCCTGCCCATCCCGGTCGT 5899763 36 100.0 37 .................................... CAAGCCCGGCTCGGACGACCCATCACCCTGAACGATC 5899690 36 100.0 34 .................................... TTATCCACGCCTGGAACTGGGTCGTGTCCTTGCC 5899620 36 100.0 35 .................................... ATATCTGACTGGTTGCCGAAAATGAAGATTAGGGT 5899549 36 100.0 36 .................................... TCCACTTGTTCTTGGTTGCAACTTCGAAGATTTGAT 5899477 36 100.0 36 .................................... GTGACCCCGTAGGTGGAATCTTGGGTGCTGTGGACC 5899405 36 100.0 36 .................................... GCGTCGAACATCCGGGTCTGGAACACGGTCGAGATC 5899333 36 100.0 34 .................................... AACTGGTCGAGCGGCGCCGGCACCGCGAACGCGC 5899263 36 100.0 38 .................................... GGCCTGAGTTGGCTAAACGGTGGAGTGGGGCGTGGGGT 5899189 36 100.0 36 .................................... CCGTCCCGGAACAGGATGCGGGGCACGCCCTCGTCG 5899117 36 100.0 34 .................................... TGGGGCCTGCTGTTGTGGCTCTCGCACCGCGGCG 5899047 36 100.0 35 .................................... TGTGCGCGGCGGAAGCGCGTACAAATTGTGTGCTC 5898976 36 100.0 36 .................................... GCGCGGTACTCCAGTCTAACCCTGAAGCGGGTGCGG 5898904 36 100.0 35 .................................... TGATTGTGGACCTGAGCAGCGTGGCGTCCGCAGGT 5898833 36 100.0 35 .................................... CTCTGCCCCGCCCGGGGAACGCGGCCGGTCGCCCA 5898762 36 100.0 47 .................................... GGCCCAAAGACTAGAAGCACGTCACAGCCCGGCCCGGGCGAAACCAG 5898679 36 100.0 35 .................................... ACCCGTTCTGGAGCACGCTGCGGCCCAAACACGAC 5898608 36 100.0 34 .................................... ACCAGCGCCAACGGACGGTGCGTGAGCCGGTGCA 5898538 36 100.0 38 .................................... TACAGCGCCGCCAGCGTCACCCCGCTCTGGGCGAGGCC 5898464 36 100.0 37 .................................... CCGGGGTTCTTCGCGGAGAAGATCGCGCGGCACCGCA 5898391 36 100.0 35 .................................... CGGTAGGCCGGCTGCTCGTCCGCCAGTGTGCCCCG 5898320 36 100.0 38 .................................... AGCGCCACCGAGCGGGAGAACGTGTGGGAGTGGTGGAC 5898246 36 100.0 33 .................................... AAAATGCTTTCCTTGCTACGCCGAATATGTCGG 5898177 36 100.0 36 .................................... GACGAGGCCGTGGCTCGGTACTATCGGGAACGCAAC 5898105 36 100.0 36 .................................... CAAGCGGGCGCGAGACTGACGCGGGCGCGGGCGCGG 5898033 36 100.0 33 .................................... GCCTGACGGGTCGAGCGGCGGTCGGACGCGAAT 5897964 36 100.0 36 .................................... ACCCACGAGACGCGGACGCAACGCCGCTACCCTGGT 5897892 36 100.0 35 .................................... GTGTCGCCGAGCTGGAATCGATCCTGGCCGCGGTG 5897821 36 100.0 37 .................................... GTGGCCCGCGCAAACGGGTCCGGGGGCGACTGCGCGC 5897748 36 100.0 35 .................................... GCGAGAGCGGAGGGCGGCGGAACCGTTGGCACCGT 5897677 36 100.0 34 .................................... ATAGCCTGAGCCCACTTAGGTAGATTGTTGATGT 5897607 36 100.0 35 .................................... TGCTCCCGATCCACCTGACAACGAGGCTCTCTGGT 5897536 36 100.0 36 .................................... CGGGACTACAATCGGTGGGCTTGGGTGGCGGTTGGT 5897464 36 100.0 35 .................................... ATAGCCAAGTGGACCGAGGATAAGAGGGCTCCCCT 5897393 36 100.0 35 .................................... ATACCCGTTCGATTTCACACTAACCTCGACCTGAT 5897322 36 100.0 36 .................................... CTGTGCCTGAACGGCAACAACGGCATACCGTCCGGA 5897250 36 100.0 35 .................................... CCCAAATGCCGCATCGCCAGGGCGAGCGCGGAGAC 5897179 36 100.0 34 .................................... AGCGCACCGCAGTGGTACGTGTTCCGCTGGGGCA 5897109 36 100.0 35 .................................... ACCGTAATATCAGACCGCGAGGGCAAGCCCGCGGC 5897038 36 100.0 34 .................................... GCAGTGATGGCGGACCGGTACGAGCGGGGGCAGG 5896968 36 100.0 38 .................................... GCTCGCCCGGCCAAACCTCACACCACCGCGGCAGTCCT 5896894 36 100.0 35 .................................... GAGCGGCTCGCGAAACTCGACTTCGCCGCGGTGGT 5896823 36 100.0 37 .................................... TGCCACGTTGCGGACGTTGCGGGAGGCATGCCCCGAT 5896750 36 100.0 34 .................................... CTTCGTATTCAAGGACGAGCGAAAGTACCACTGC 5896680 36 100.0 34 .................................... GCGGGGGCCGGTTTGTACTCGCGCGACGACGAGT 5896610 36 100.0 36 .................................... TCCGTCCCCCCGGCCGGGTATCCGGGGGCACCTGTG 5896538 36 100.0 35 .................................... ACGGTGCTGTGGGTCGACGGGTTCCGGGTCGGCAC 5896467 36 100.0 34 .................................... CGGGCCATGTTCCCGATGGAGCCCGGTACGAAGT 5896397 36 100.0 35 .................................... GCGTCATGTCGCGGTCGAGCGGGTCGTTGTACGGG 5896326 36 100.0 38 .................................... AACTGGAGGTCGTAGGTGCCCTGGTACGGGTCGGTCGC 5896252 36 100.0 36 .................................... GGCATGATCGCCCGCATCGTGGCCCCGCTCATCGCC 5896180 36 100.0 35 .................................... GACGCGGGCTACCACCCGGTCATCGCCCTGCCCCT 5896109 36 100.0 37 .................................... CTTCGCTCGGCGAAGCAGATCCGCGCGCTGGCGCCGT 5896036 36 100.0 35 .................................... CAGCGGGTGGTGAACGAGTACTACGGCATGTTCGT 5895965 36 100.0 36 .................................... GACTGGCAGGTGGGGCACTGCGAGGTGAAGCCCGAC 5895893 36 100.0 36 .................................... GCCCGCGACCGCGAATCGCTCACCCGGGGCGAGCGG 5895821 36 100.0 35 .................................... ACAGCCGAAGCGGCCCGCGTACGCGCGGCCCTGGA 5895750 36 100.0 34 .................................... GGCACACCGGACCCCATCGACAGCAGCCGATCCG 5895680 36 100.0 38 .................................... TCGTCTTCTTCGGGCTCTCGCGGCTCTTCCTCCTCGTC 5895606 36 100.0 36 .................................... CTTCCACTTGACGATAACTGCCGTCCGGCTGACGTT 5895534 36 100.0 35 .................................... TGGTGGCGAAGGCCCGGCAGGCGCGGGCCGAGGGG 5895463 36 100.0 36 .................................... TAGATCAGACGTGAAATGGGAAGTGCGAATTGAGGT 5895391 36 100.0 35 .................................... ATTCCGAGTTCGACCGCAACGACCCGCCGCACGCC 5895320 36 100.0 49 .................................... ATGGCGTCGTAGTGCGACTTGGCCTTCAGCACGGCGGTGCTGACGCCCT 5895235 36 100.0 36 .................................... ATGCAGGCGGCCATTCTGGACGAGTTGACCACAAAG 5895163 36 100.0 35 .................................... AAGCAGCGAATCATAGCGGGCACACAAACCCCGAT 5895092 36 100.0 37 .................................... CCGAGGCGGACCCGGCGGTCGGTCCGGAGTCGGTGCT 5895019 36 100.0 35 .................................... CCCGCGGCGCCGAGCGAGACGAGCTGCGGCGGGTC 5894948 36 100.0 36 .................................... AACTTGAGGTGCGGGTGGTCCCACACCAACTCCGGT 5894876 36 100.0 36 .................................... CGAACCCTGTGCCGGAGTCTGATCGCCCCCGCCGTT 5894804 36 100.0 35 .................................... TCGTCTCGTGCCGGGTGTTTCCTCTCCACATCCTT 5894733 36 100.0 35 .................................... TCCTGCCCGTGGCTGGAAACGGCACCTTCGATCAT 5894662 36 100.0 35 .................................... GCGGCGGTGGGTCAACGGAGGGCGCGGGCGTGACG 5894591 36 100.0 36 .................................... GGCTATTCGAAGGGCTGATGCAGTCCGACGGGCACG 5894519 36 100.0 36 .................................... TGACCGCGACGGCCCCGCCGAGCCGGTCTCAGCCCG 5894447 36 97.2 0 ......G............................. | ========== ====== ====== ====== ==================================== ================================================= ================== 103 36 100.0 36 GTGCAGACTTCAGTGACGCCGTGAGGCGTTGAGCAC # Left flank : GTGCGCCCGGCACATGGAGGGGTACGGGGAGCGGGTCCAGTACTCGGTGTTCCGCTGCTGGATGAGCCAGACGCAGGTGGAGCGGCTCCGCTGGGAGCTGACGCAGTTGCTCGCGTCCGAGGACGAGGTGATGCTGATCCCGCTGCCGCAGGCCAGCGTGGACGGGATCGTGGGCATCCACGGGTCGGACCGCCCGCCGGAGTGGACCGCGGAGCCGCCGCGGCACCGGATCGTGTGAGCGCGAGGCCAATAGAACCGAATCACGCACCCGCGTGTGTGTGCCGGGTTCCATCATGGGACCGATCCAAACCTGAGTTGCGGTCTGGGTTTAACGCTCTTTGACAACTCGCCGGGGTGCTTGACGGCCGTCTGGGCCTTAAAATCCGTGTGAAGCGTGCCGCGCGTGGTTGGTGTCGGTCGTGCGGTCACGATCGGAGCGGTGTGGTGCGTGAAAACGGTTGCCCGGCGCGGCCGATTTTGAGCATTTCGGTAAGTGAGCG # Right flank : CCTATTGCGCGTTGCGTTGATTTCTTCACGCGTTGTGCAGACCACAATGCGTGAAGAAATCAACGCAACGCGCAAGTACTTGTTTAGCGCCCCGTGAGTTGGCGGGATGATTTCCTGCCCCCCCCTGTGGCTACGATAGCAGGTCTTCCCGACCGAACGTGAACGCCGAGGCGATGGCGCACATGTCCCCGTCATCAATGATCTGGAACGTCAGCCCGACGAACTGGCGGACGCATTCGGGGACGCTCGGCGATCCCAGGGCTGCGGACACGGACTTGCCCCGTCGCAGTTCGGCCAGGAAGCCGTCGATCAGGGCGGTGCGGGCTTGGCAGCGGGTCATCGCCCGGTGGTACAACTCGAAGTGGCTGACGAACCCGCCCCGCCCGTCGTCGTCGCTCTCCTCAGCCAGCACGATCTCGTTGACGAGCCGACAGCCGAGCGGGTCGGCGGCGGGGAGCCACGGCACATCGGTGCAGCAGAGCCGCCGTTGGAGCGCCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAGACTTCAGTGACGCCGTGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 8055922-8042265 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR593888.1 Gemmata obscuriglobus UQM 2246 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 8055921 36 100.0 35 .................................... GTGACGTGGGGCTCCATCTCCCGGCCACGATCCGC 8055850 36 100.0 36 .................................... CTTGTGGCTGAACTTCACGTTGGCTGCCAGCCACGG 8055778 36 100.0 36 .................................... TTCGCATGGCCGGGAGGACGCATGAGCAACGACGAC 8055706 36 100.0 35 .................................... GTGCTCCCGGAGCCCACCGGCCGGTGCTTCGCCAT 8055635 36 100.0 38 .................................... AAACACACCAGGGAAGGGGTGACGGTATGAGTTATCCG 8055561 36 100.0 36 .................................... CTCGACCCGCACCCCCTCTTGGATCGTGTCCGCGTT 8055489 36 100.0 38 .................................... CTGGCCCAGTCCGGCCGGATGTTGTGCAGCCGATCGCC 8055415 36 100.0 36 .................................... GCCCGGCCCGTGCTCCCGTGCGGCCCGGGTCAGACC 8055343 36 100.0 37 .................................... TCTGCTTCGCGTCCTCCGGGCTGTCCGCCTCCACGCG 8055270 36 100.0 35 .................................... GTGGACACCCACGAGCCGGTCGTGCTCGTGGTGTC 8055199 36 100.0 36 .................................... CAGTGCCCGCACTCGGCGTAGATCGGCTCACCGTCC 8055127 36 100.0 36 .................................... GTAGCTCCGGCAGTGTCACAGCTTATCAACATCTCA 8055055 36 100.0 37 .................................... TCGGCTCGCGGGCGCGACGATCTTGCGCGCGATGTAC 8054982 36 100.0 37 .................................... CGGGTACAAGCGGCAGATCGACTCGCGCATCGTGCCG 8054909 36 100.0 38 .................................... CGCAAGGGGTACGGGTGGCAGGCGTGCAAGCGGGGCGC 8054835 36 100.0 37 .................................... TGCGGTCCGTGCCCGACGGCCCCCACTCGTCGCCGAA 8054762 36 100.0 39 .................................... TCCTTGATCGCGGCCCGCACCAGCGGCGTGAGGGGCACG 8054687 36 100.0 36 .................................... GACCTGGTTTTCGCTGACCCGGACGAGTCGGCGGGA 8054615 36 100.0 36 .................................... CATCCTGAAGTGCGTCGGATCGACGTGGGATTGGGC 8054543 36 100.0 39 .................................... TACGCTCTCGTCCCCGCCGTTCTGCTCGCCCTCCTGACC 8054468 36 100.0 37 .................................... CCCACCGATTCGGCGGCTTGTCGCCCCGCGCCTTGCG 8054395 36 100.0 42 .................................... CGCGGCTCGGTACGGCATGGCACGGCTGAGCGGGGCATGGGC 8054317 36 100.0 37 .................................... AATGAAAGTCCGGCCGTCGAGGATCGGGGTGAGCAGG 8054244 36 100.0 38 .................................... GCCGTCGAGCGCTCGCTGGCGGCCGAGATCGCGAGCCG 8054170 36 100.0 38 .................................... CAGGTTTTGGGCCTCGTCGCCGATAACGATTTGCGGTC 8054096 36 100.0 35 .................................... TTGGTACGGAACGCATTTCAGCGGAGGCTTGTAGT 8054025 36 100.0 36 .................................... ACGTTAAGGCATCATCAACGTCCTCAACGGCTCTCG 8053953 36 100.0 38 .................................... CTCAGTGTTGAGGTTCACATCCGGGACGGCCCCGACGC 8053879 36 100.0 37 .................................... CGGCGTAGATCGCCGGGTCGTCACTGCACCCCCGCGC 8053806 36 100.0 36 .................................... GGTGCTGGACCGGCTTGACGAGGTCGTGGGAACGGC 8053734 36 100.0 36 .................................... CCGACGATCGCCCATCACGCAAACGACGTGCTGCTT 8053662 36 100.0 38 .................................... GCGCCGCCCGGCGTGGGCGAGCGGCGGAAGCGCGGGGA 8053588 36 100.0 37 .................................... AGGAGCACGTGTGGGTCGCGGGCAACCTCGACTTCGC 8053515 36 97.2 37 ..........A......................... TGCCCAGGTTGCGGTACAGCGGGTGCGGATCACGGTA 8053442 36 100.0 37 .................................... GCCGCCGACGATCGATACAGCCCTGGACAAGGTAGCA 8053369 36 100.0 36 .................................... CGACGCCCTCGGGAAGCTCGCGAACTACCTGGGGCT 8053297 36 100.0 37 .................................... GCGGCAAAATCGAGATGCTGAGTGCGGACGGGGTGTC 8053224 36 100.0 36 .................................... CTCCTCCGGCTTCACGCCGCTCGCGCTCCCAATACT 8053152 36 100.0 37 .................................... CGCTGGCGCCCGTGACGCGGCGCTTCGAGGACATCGT 8053079 36 100.0 36 .................................... GGTCAGGCTGGGCACCGCCGGGGGCAGCGCGGTCGG 8053007 36 100.0 36 .................................... CCTCCGAAGCCGGTCAAGCCCGCGGCGCCACCGCCG 8052935 36 100.0 42 .................................... GGTGAGCGGGGTGCGCCACCACGGCTGGCCCGCGTTCCGCAT 8052857 36 100.0 36 .................................... GGGCTGGTGCAGGGGTTCGCGCCGCCCACGCAGCAG 8052785 36 100.0 37 .................................... CGGGCTGGTGCAGGGGTTCGCGCCGCCCACGCAGCAG 8052712 36 100.0 36 .................................... GGAGGCGCGGCGGCTCACCGGCATCGAGCGGTACGG 8052640 36 100.0 36 .................................... CCGTTCCTCGCGCAGCACGCGGTGAAAGTGCTCGTG 8052568 36 100.0 36 .................................... GCCGATGGTGGCCTGAAAATCGCGCATGGCCTGTCC 8052496 36 100.0 36 .................................... GGGGCCGTTCGCGTGCCCACTGAACGAGTGCGAGGA 8052424 36 100.0 36 .................................... GTCGGTGAGCGAGGCGATGTCGCGCGGCGTGAGGCC 8052352 36 100.0 36 .................................... AGGGCCGGACGGGGAACGTCCCCGCTCCGGGTATCA 8052280 36 100.0 36 .................................... CTCGTGTTCGTAAAGCAGGGCGGCTTGGCGGTTGGT 8052208 36 100.0 37 .................................... GCCGCGGCCCGCCGAGTGGCTCGCGGTGGTGCCGGTG 8052135 36 100.0 38 .................................... CGCGGCCGGGTGGGAACGCGGCGTACATCGAGCACCTG 8052061 36 100.0 38 .................................... GCGATGGTCTCAAGATGCTTGCAACGACGGTGCGACTG 8051987 36 100.0 37 .................................... TGCTGTCCCCGCGCCCGGTGCGGATGGTCCAGTCCGT 8051914 36 100.0 36 .................................... CCCCGGGCACGCTGTTCTCGTTCTGGGGCGGTGGCG 8051842 36 100.0 37 .................................... TCCATCCCAGTGCAACGCCAATCGCGACGCCCGCGGC 8051769 36 100.0 36 .................................... GCTGGCCCCAGGTTGCCCCGTGGCGTGCCACGAACT 8051697 36 100.0 37 .................................... CGGCAAGCCGCTGACCCAGCCGTTCGACCCAACGACG 8051624 36 100.0 37 .................................... ACCCGTCCAACAGTTCGGCGGCCTTGCGAATGTGCCC 8051551 36 100.0 38 .................................... GACGAGGCGGCGGTGGAGATGTTCGCGGACAAGGTGCT 8051477 36 100.0 37 .................................... GACGGTCAACAGCGACCCGGGCCCGGCGAATTCGTAG 8051404 36 100.0 35 .................................... TCGAAGTTGGCGCCCAGGGCCTGGGGTGCGGCCGT 8051333 36 100.0 36 .................................... CCAGAGCGCGAACACGTTCGAGGTCCGCAACAGTTC 8051261 36 100.0 36 .................................... CTGACGCTCCCTGAGGTGTCGAGTTTCCGCCGCGGC 8051189 36 100.0 38 .................................... TTCATCCTGCGCGAAGCGGGCGACAGCAAACGATGCCC 8051115 36 100.0 36 .................................... GGTGGCGGTGGGTACGAAGTGGAAGATCTGGCTAGA 8051043 36 100.0 38 .................................... GTGGCAGCCCCAATAAACCCTCGCTGCATGGCTGCGTG 8050969 36 100.0 42 .................................... CCCTCGGGACCGCCGGCAGTTTCGGCACCGCTGCGCTGCACC 8050891 36 100.0 36 .................................... CGAGGCGGGCCGGGTCGAGGACCGCGAGGAGCTGAC 8050819 36 100.0 36 .................................... GCGAACGATCCATGTCATCATGTCCGCAGTGTCGTC 8050747 36 100.0 35 .................................... CTTGCACGGGACATTCGGCCATTAACACACCACTG 8050676 36 100.0 35 .................................... TTCGCTGCGTTACAAACTTGGTTTGACGTCCGGCT 8050605 36 100.0 36 .................................... ACGATCGCACCGTTCAAAACGCGCTTTCGAAGGCCC 8050533 36 100.0 35 .................................... ATCGAACTGAACCCTGCGTATCACGAACTGATTCG 8050462 36 100.0 36 .................................... GCCGGTGCGGTTTGCGGCCTCAGAGAGCGGCCCCAG 8050390 36 100.0 36 .................................... CAACGCCCAGGTGCGGATCGGGGTGCTGATGGCCAA 8050318 36 100.0 38 .................................... CACAACGCCCAGGTGCGGATCGGGGTGCTGATGGCCAA 8050244 36 100.0 35 .................................... AGGGGTTGAACTGATTTGGATGGTCATTAATCGCG 8050173 36 100.0 35 .................................... ATGGTGCGCCTGCCGGAGGCGTACCGGGACAGGCT 8050102 36 100.0 36 .................................... CGGGCGGACGCGCGGCACGCCGCGCGGCAATGGATG 8050030 36 100.0 36 .................................... GAGCGTCACGTCCTGGTGAGCGCCGGCGATCGCCTG 8049958 36 100.0 34 .................................... AAGGCGGTTCCGCCGGGGACCACGGGCCGCGCAT 8049888 36 100.0 35 .................................... CGCGGGGCTCTCACGTGGCCGATCCCGTCAGCGCC 8049817 36 100.0 37 .................................... TTAACTGAATCCAATCATTAGGGAGAGCGTGCGGGAG 8049744 36 100.0 38 .................................... CCGGGGTACGCGCCGTCGTCGTCCGCGAAGTAGTCCGC 8049670 36 100.0 35 .................................... AAAGATTCGTTCGCGATCAAATCGCACCGCCTGAT 8049599 36 100.0 35 .................................... CCGCCCACCTCGGAGACTCCCGCGTGACCCGCGAC 8049528 36 100.0 37 .................................... GCCCGTTCCCGCGTCGCCGATGCCGGCCCCCGCGCCG 8049455 36 100.0 38 .................................... GTCTTTCAGGCTCATGCGGACATCCTGAAAGTGCAGTG 8049381 36 100.0 36 .................................... ATCCGTAGACGTAAATAAAGATCAGGTCGCGGCCCG 8049309 36 100.0 38 .................................... TCGATCTCGACGCGGCGGACGGCACCGCGGAGTTCGCA 8049235 36 100.0 37 .................................... TCCGCTGGGTCAAGACCGGCACCGAGCAGGGGGCCGA 8049162 36 100.0 39 .................................... CCCGGCGGGGAACGTGGTCCGCATTGAGGTGCGGTGGAT 8049087 36 100.0 36 .................................... TCGTAAGCGGCCCACTGCTCTCGCGCTGCCGCCACC 8049015 36 100.0 37 .................................... CCGACACCGACCGGCTGCGGTCGCTGCTGAGCGACCT 8048942 36 100.0 37 .................................... GCGCCCACCAGTGCCCGGCCTACTTCGATCCGAGAGC 8048869 36 100.0 37 .................................... CTGGCTGTGTGCCGGTCTGAGCGACTCCCCACCGCAC 8048796 36 100.0 36 .................................... GCAACCGGGTCGGTGAACGTGGCGGCATGAGCAACC 8048724 36 100.0 37 .................................... GGCTACATTGGTTGTCGAATTAGTGCCGTTCTTTAAG 8048651 36 100.0 35 .................................... CCGCGCTCCAACGGTAGCACTGTTCGAGCCCGCGT 8048580 36 100.0 36 .................................... CGGGCTGCTGGTGCTGCGAACCTCGGGCCAGGTGGT 8048508 36 100.0 36 .................................... TTCCGGTGACCGCCCGAGCTATTACGTTTCCATCAT 8048436 36 100.0 36 .................................... CTTCCGGTCGAGAACGCCCCCGCCGCTCCTACCGCG 8048364 36 100.0 36 .................................... AACCTCATCTCGCGCATCAACGCCTCACCCGAATCG 8048292 36 100.0 36 .................................... GCGGGGGTGGACGCGGGCGGAGATACGGAAGCGGGT 8048220 36 100.0 38 .................................... TCCAGCGACCCCGCCATCTCAGCGCCCCGTGAGTGAGT 8048146 36 100.0 37 .................................... CCGTCACAGGCGCGGGCGAACGAATGTACGCCCCGGG 8048073 36 100.0 38 .................................... CCGGGTGGTCCAGGGGTACCGCCCGAACGGCGGGGCCT 8047999 36 100.0 37 .................................... TTCAGAAGCTCCTTACTGCCGTCCTCGTACTTGGAGC 8047926 36 100.0 34 .................................... TACAACTTCTGGGCGGAAATCCGCGGAGTTCTGT 8047856 36 100.0 49 .................................... TCATCGCGGCCCTGGCCCGGGTGTACGGCCACGCGCACGGGACGGTCGA 8047771 36 100.0 36 .................................... GGCGCGGAGCAGGTTCAGCTCCACTTCCGTGCGGTA 8047699 36 100.0 35 .................................... GCGGCGCTGGTGGACGCGGCCGGGTCGCACGTCTG 8047628 36 100.0 38 .................................... TTCTCCGCGGGACTCATGCCGGCGAGCCGGAAGCCGAA 8047554 36 100.0 35 .................................... GCTGCCGGGCGAAGACAGCCAGACCGCTTTTGGCC 8047483 36 100.0 35 .................................... CGCGCGACTCGCAAACCCCGGCGTGCCGGACTGCG 8047412 36 100.0 37 .................................... GCGACACCTCGGGGTAGTCGGCCGCGAGAAGCTCGTT 8047339 36 100.0 35 .................................... ACGTCCGTCTGAGGTGCGACATGCCCGCGTACATC 8047268 36 100.0 38 .................................... TCGATCGCGGTGTCGTGGGCCGAGGAGAAGGCGAGCCG 8047194 36 100.0 37 .................................... CACCTCGCCCGCGTACCGCGAGTGGCAGGCGAAGGCG 8047121 36 100.0 39 .................................... CAGGACACCACCGTCAACGAGCTGTGCAAGCGGTACATG 8047046 36 100.0 40 .................................... TGCGAGCCTGCGCTGAGGGCGAGACGGTGACGATCACCGG 8046970 36 100.0 36 .................................... CCGCACGAGCACCTGCGCGGTGGCAACGGGGATGTC 8046898 36 100.0 36 .................................... GACCGACGCGCAGAAGGCGGCCCTCCGCGCCCACCT 8046826 36 100.0 36 .................................... GTCAGCCACCCCGTGCCCCCGGCGGCGGTACATCAG 8046754 36 100.0 39 .................................... CGCGGGCGTTCGGTCGCCGGGGTTGTCCCCGCACGCGGC 8046679 36 100.0 37 .................................... AACCAAGGAGACGGAGATGCCCCGGAATACGGACGTG 8046606 36 100.0 36 .................................... ATGGGCTCTCGACCGCGATTCGTGCAAATGCTGCGT 8046534 36 100.0 36 .................................... GCCGTCGTCGGTGTGGGCTGGGTAGGAACCCCGGTG 8046462 36 100.0 39 .................................... CCTCGGCCCCGGGCCATCGTGTGCGACCACGACGAGGAG 8046387 36 100.0 36 .................................... TTCGCCCGCTTCCGCTTGGCCCGCGGGGGTGTCCGC 8046315 36 100.0 36 .................................... TCGACGGCGCTGTTCCAGATCACCCTGCTCGGTCTG 8046243 36 100.0 37 .................................... CGCCGCCCCAGTTGGTCACGTCGGGGGAGCCGGACTT 8046170 36 100.0 35 .................................... GCCGGCAGTCCGTTCGCCTGGGCAAGCCGCCGCAC 8046099 36 100.0 36 .................................... CGTCAAGCCGGCGATCAAGCGGGCCGAGGCGATCCA 8046027 36 100.0 36 .................................... GGCCGGTCTGTGCGTTGACGAGCAATGCCATGGACG 8045955 36 100.0 37 .................................... GGCTCGGTCTTGGGCAGAGGCTAACGGGCACGAATTC 8045882 36 100.0 40 .................................... CCCATCCAGTGAGAAGTCGTCCGCATTAAACTCTTCGCTG 8045806 36 100.0 38 .................................... TCTGCAAGTCAGCGTCAGGTATGACCAGAACTTCACAC 8045732 36 100.0 35 .................................... GCCGTCTCTGAAGTAGGGTGAGATCCACACTTCCC 8045661 36 100.0 36 .................................... ACGGGGCCAGGATCTGTGACAGCTCCTCGGCGCTGG 8045589 36 100.0 35 .................................... CACATCCCCGCCCGCACGCTGGTGGTGAGCGACCT 8045518 36 100.0 36 .................................... GACCAGTGCGGAATACCAGTTCGACCACCGGCAGCG 8045446 36 100.0 35 .................................... CCGGGCCGCTGATCCAGGCCGCGGCCGAATTGACC 8045375 36 100.0 38 .................................... CCGCGCGTTGGCGTTGGGGCTGGCTGGCGTCAGGGTCA 8045301 36 100.0 38 .................................... CATCACTTGCCCTCACGGATGGCCTTGCGGTAAAGCTG 8045227 36 100.0 35 .................................... ATCGGCCGCACGTGCCGGCCGCTCGGGGGCAGGCT 8045156 36 100.0 52 .................................... TTCTGAGGCGGCGCCGTGTACCGCGGAATACGTGTGCGCAGTTGCGAATTGG 8045068 36 100.0 38 .................................... CCGTGCGGTGAAACTCCAAACCTGTCAGACGAGCCGTG 8044994 36 100.0 35 .................................... GTGACCGCGACTCAAACCAAAGCGGCCGCATACAG 8044923 36 100.0 36 .................................... GAAACGCTATACACAATCGCTCAACGCGAGCAGACG 8044851 36 100.0 36 .................................... GCGGTTCCGGGCAAGGGCCAGTTTACGCCGTTCGTG 8044779 36 100.0 38 .................................... ATCGCCAGCCGCCACAGGCCCGCTTCGCACGTCAGTGT 8044705 36 100.0 39 .................................... CTGGCAGCGGGCCTGCAAGGCGGCCCACCCGGGTGCGAA 8044630 36 100.0 37 .................................... CTGTGCCGTCCGGTGTAGTGCCTGCGGTTAAGTCAGA 8044557 36 100.0 36 .................................... TAGAGCCGGGTATTAGCATCACCACCAAACCAAGTA 8044485 36 100.0 36 .................................... AGCCGAGCTAGCTGCTGGCCGCGCAAGAACCTTTAA 8044413 36 100.0 36 .................................... CTGTTCAACGTCTTTAGGGCAGCGAGCTATGGGAGA 8044341 36 100.0 36 .................................... GGTTGCACGGCTACCCTGCACACATGGCCAAGTCGA 8044269 36 100.0 37 .................................... AAGCCGACTCGTGGCGGACGGACCTGGGGCACAAGCC 8044196 36 100.0 36 .................................... GTACTGCCCCCGCGGAAAGCCTTCTAGCTCGGTGAG 8044124 36 100.0 39 .................................... CCCTTCTCGGTCACGGCGGCCCGCGCGGCCGTGTTGACC 8044049 36 100.0 40 .................................... ACCCGTCCGGGCTCGCCTCGAACGTCACCGCGAGGCTCGT 8043973 36 100.0 36 .................................... CCCCGACTACCTCGCGGGCGTGCTGATGGGCAAGCA 8043901 36 100.0 41 .................................... CGGCTGCGGGTGGCGGTGGGGGCGTACAACCAGACGCACGC 8043824 36 100.0 35 .................................... GCCCGCGAGCTGCTCAGCGGCACGGCCGCCAACGG 8043753 36 100.0 36 .................................... CTGTTGGAGAGCTTCCTTTTCCTTGGCCGTGCCTTG 8043681 36 100.0 34 .................................... AAGTGCTTCGAGTTATTCGGACGCAGTCTTCGCT 8043611 36 100.0 37 .................................... GTAGTGGTCAAGGGCGTCGAGACTGTCGCGGCGGCCA 8043538 36 100.0 36 .................................... GAGGAAGAGGACGACGAAGAGGAAGCAACTAAGGTC 8043466 36 100.0 37 .................................... CCGAAATATCGAATTTGCGGTTTACACCGCAGAGTGT 8043393 36 100.0 36 .................................... CCGATCGACGGTAAGTTTGTCATAATACCAGTTGAC 8043321 36 100.0 37 .................................... ACGGCGGTAGTGGAATAAACGTGTGCGATCGCTGGCT 8043248 36 100.0 38 .................................... AAGGCCACCGCTGCCGCTTGACCCGTGGCGATTTGATT 8043174 36 100.0 37 .................................... GCATCGGTCTTCTGACGAACTTCGACTTGATCCTTCA 8043101 36 100.0 38 .................................... TGCATCAGGGCGGTAGTCATTTTGTCGAGACAACGCTG 8043027 36 100.0 40 .................................... TCGTGCTGTTCTACGAGAAGTGGCCGATGAATGGTGGCGA 8042951 36 100.0 36 .................................... GCTCGTCCCCGGTATTCAGAAGTTGGTGGACGAAGG 8042879 36 100.0 38 .................................... GCCGAGGGATTCCAACTCGCGTAGTCAAGGTAGAAGTT 8042805 36 100.0 36 .................................... TCATTGTCTTCAACTTGAATGTACGTTGGCACTGCG 8042733 36 100.0 34 .................................... TCAGCCGTCGCAGGGCTGACAGTCTCGCCGCCCG 8042663 36 100.0 36 .................................... CGGAATCCGCGCGACCGGTGCCGGTATAACCGTCAG 8042591 36 100.0 36 .................................... GTTATCGTCAAAGATCGCATAACCAGTGCCCAACTT 8042519 36 100.0 36 .................................... GGCAGGAACCGAAGTTCCTGCCTTGCAAATTTCAAT 8042447 36 100.0 37 .................................... CCTTCACGAAACGGGTGCTGAATGGGCAGCACCCGCT 8042374 36 100.0 38 .................................... CTGCTCGATGCGGATGAGTACACGGTGGAGCCGCTGGA 8042300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 188 36 100.0 37 GCTTCAATTCGGCCGCGGCTATGAGCCGCGGAGAAC # Left flank : CAACCTCCAACGCGACGACCTGCTCGGCCAGTAACCGCAGGCTCCAGTTGGCGAAGCCCTTGGGCGGCGGACCCAATCGCATCGCGATGACTTGGGCTTCCTGTTGGCCGTCGAGCAACTTGGCTCGCGGGGGCTCGGCCCGGGGTTGGCCGTGGAGTGCCACCTCGAACCCGCTCGTCACCACGCGCTCCCGGATATTCTCCACGGTCTTGGTGCGACATCCGACGGCCTCGGCAATCTTCGCATCCGTCCAGCCCGGGCCATCGGCATCGGCCTTCAGAAGAATCTGGGCCCGACGAACCTTCTGCGAGGATCCCTTGAGTTTCTTGACCACCTCCGACAACGTGGCCCGTTCCGCATCCGAAAGACGAACGATATACTTCTTCATCACGGCGGCACCTCACGGGGGGGGCTGCCATCATACCAATGGACCCCGTGGCATCCTAATTCGTTAGCCTGACACAGCACTAGGGCGACGGATAGCAAGGCGCGGCCGAGGA # Right flank : TTCGATTCTCAGAAATTATATCGTCGCAACGGATTATCGCAATCTCCGCGAGCGGTTGAGCGCGAAACGCTGTCATGACGTAAACTCTGGGACACCAGTTGCCACAACCCGCTGACCAAACCGTCGGTTGCGACTTGCGAGCGGTGGCGAACTGGCGCCCGGTGGAAACTCGTTAGTTGTCAAAGACCTTCGGCGCGAAACGCCCGACGACGCGTTTCACCACCGGGCCGCTCGCGTGTCAGATCACCCGGTCAGGCCGGGCAGGTTCGGCGTCTTGCCGACCAGAATGCGCGAGGTCCGGAACACCGAAGTGACCCTGAACCCGCGGAGCAGATCGGCCTCCCAGGATTCGGTCTGGAGGCCCCGCAGGGACAGCATTGAGGCCGCCCCGTCGGCTGTCAAGCACGAATCCCACAGCGGCCACAGCCAGAACGTACTCGCCGCGCGGTTGCCCCGGAACCCGCGGGGTGCGCACGCGGTCCCCGTCCGGGAACGACGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATTCGGCCGCGGCTATGAGCCGCGGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-15.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //