Array 1 2165-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKH01000026.1 Klebsiella pneumoniae strain 20180848 1-20180848_S1_L001_R1_001_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2164 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 2103 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 2042 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1981 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1919 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1858 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1797 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1736 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1675 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1614 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1553 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1492 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1431 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1370 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1309 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1248 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1187 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1126 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1065 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1004 29 96.6 32 ........T.................... TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 943 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 882 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 821 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 760 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 699 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 638 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 577 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 516 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 455 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 394 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 333 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 272 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 211 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 150 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 89 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKH01000008.1 Klebsiella pneumoniae strain 20180848 1-20180848_S1_L001_R1_001_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 62 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 123 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 184 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 245 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 306 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 367 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 425 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7340-6341 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKH01000051.1 Klebsiella pneumoniae strain 20180848 1-20180848_S1_L001_R1_001_(paired)_contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7339 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 7278 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 7217 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7156 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7095 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7034 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6973 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6912 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6859] 6858 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6797 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6736 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6731] 6674 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6668] 6611 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6550 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6490 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6429 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6368 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //