Array 1 186256-184034 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089472.1 Klebsiella pneumoniae strain MGH102 aeurR-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 186255 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 186194 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 186133 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 186072 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 186011 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 185950 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 185889 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 185828 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 185767 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 185706 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 185645 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 185584 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 185523 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 185462 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 185401 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 185340 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 185279 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 185218 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 185157 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 185096 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 185035 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 184974 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 184913 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 184852 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 184791 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 184730 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 184669 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 184608 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 184547 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 184486 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 184425 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 184364 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 184303 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 184242 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 184181 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 184120 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 184062 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCGATCGTTATTGTTGAACCGCACTATGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTTAATAATATCATCGGCAATGTCCTTATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGACCGGATCCGCGTGGGCGACCAGGATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACCGATATTCAGTGCGCCAACGCCATAGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGGTTTTTCATACCTTCGGCAGTCGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCAGCGGGGATAAACCGCCGACTTGGGACGAGGATCCGGCGGAATGTCG # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188028-186415 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089472.1 Klebsiella pneumoniae strain MGH102 aeurR-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188027 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 187968 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 187907 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 187846 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 187785 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 187724 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 187663 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 187602 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 187541 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 187480 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 187419 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 187358 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 187297 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 187236 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 187175 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 187114 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 187053 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 186992 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 186931 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 186870 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 186809 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 186748 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 186687 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 186626 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 186565 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 186504 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 186443 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCAGCGGGGATAAACCGCCGACTTGGGACGAGGATCCGGCGGAATGTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAATGGCAAAACCATGACCTGATCCGGGCGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGAATCTTCACTTCGTCGATCATTCTGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTCAAAAGGTTCATTCGAGCATCGAGTTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAACGCAGACGGCGAACGTCGGATCCATTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACCAGAAAGCCTGGGCATTGTTCCGCTCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //