Array 1 21451-21230 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSF01000013.1 Geobacillus sp. MAS1 T260_scaffold11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 21450 30 100.0 36 .............................. GAGCTTTGATATAAATGCTGTCTCCTTGTCCAACGT 21384 30 100.0 36 .............................. TCGTCTGAATTTGCCGACAGGGATGGGAAAAACATT 21318 30 100.0 29 .............................. TCAAAGGGACAAAAGATCGGTCATATTGT 21259 30 90.0 0 ................TA...........C | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 34 GTTTTTATCGTACCTACGAGGGATTGAAAT # Left flank : TGAGACGATGGATGGGAGAAAGAAAACGCAATTTTTTGATCCTGATGATGAGGTATTCCCCCACTTGATTGAATTGAATTTCTGTCACAAATATGTAGCGTACTATGGTGTTCCGCCAGCGGAACGATTATCGATTCAACCGATTTATGTTCATCGGCGTCATCGTGTGGTCACACTATTCAAGGACATGTATATTACAGGCTGGATGGGACATTATCGTCTTTGTTCTTCGCCAGAACAGTTGACATTTTTGTACCACGTCGGTCTTGGCAGTCGAAATTCACAAGGGTTTGGAATGTTTCGCCTCGCAAGTGGATAAACTAGCCGCAAGATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATAATTTTTGGCGGTTCAGACTTACAGCCACCGAGGTTGAAGGGTATTGACAGAATTTTTGGAACGTGGTACTCTGAAAACAGTGTTAGATCGAAATGCTTGATACAACAAGCATTTTTGG # Right flank : TTTGAAATAAAAGAATCATTCGAACCCGATGAGCAGGTACAAGACTGGTTGGGTTGCAGCCAAACCAAAGAAATGATGATGTCGATTCAACAAAGATATGGAAAAAATATTTGGAGATTTATCATCTCGCGCCGAGGAGACCCCCACTTCCACGCGTGGGCGTAGGTGGGAGAGCGTTCAATGTCCGAGCTTTTGGTTCGTTTGGAGTTGTTTCCATCAGTTGGCTTCACATCATTCGGAAGTAAATGGAGGTTGCAATGCGCTCTAAACTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCGGACAGTGATCCGCACTGGGGTGACGGCGGTGTTGCCGCATGGGGGCAACTGGTTTTTGGAGAAGGTGCCCGCGGCTTGTTTTGTTTTGAACGGTTTTGGGAAAACGGTCGGGTTG # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTACGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 28011-29407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSF01000013.1 Geobacillus sp. MAS1 T260_scaffold11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 28011 36 100.0 30 .................................... CCGACGCTGTTTTTTGCCCGCTGCGGACTT 28077 36 100.0 29 .................................... CGCCAGCAGCGTAAGGGAGCGCTACGTCT 28142 36 100.0 30 .................................... ATTAATTTCGCGAGTTCATACGCGATTTTT 28208 36 100.0 7 .................................... NNNNNNN Deletion [28251] 28251 36 100.0 29 .................................... TGGCCTTCGCTTTTGCACGTTGCATTAGG 28316 36 100.0 30 .................................... TCACGATCGGACCGTCATCCGCATCTGCCA 28382 36 100.0 30 .................................... CACTTCTCCCATGAATGGATAAATATTTTT 28448 36 100.0 30 .................................... CTCCGCCGCTTCTTTGTAGCTAAATCCTTT 28514 36 100.0 31 .................................... TCCGCCATTTAACCGCAACACCTCCGACGTC 28581 36 100.0 30 .................................... CCATTCGCCGTCGTGAAACATTTTGCCGAA 28647 36 100.0 30 .................................... TTTCGGCTCGACAACGAATACTTCCGGCTT 28713 36 100.0 30 .................................... ACCGCCGACGCAATTACTATCACAGACAGT 28779 36 100.0 30 .................................... AAGTTCGTGCAAGACGCATACCAAGCGCGG 28845 36 100.0 30 .................................... TCCGAAACTCTTCAAAGTGAAGTTTGGTTT 28911 36 100.0 29 .................................... TTTTTTAATCGGCTTATCCACCATTACCG 28976 36 100.0 30 .................................... GTTGAAAACTTTTAATTATCATCATTATGA 29042 36 100.0 30 .................................... TCCGACCGCCACCCGTTTTCATAAGGCATA 29108 36 100.0 30 .................................... GTCGTACCGATTTTTAAATGTCTAAACACA 29174 36 100.0 30 .................................... GCAGTAAGTGCAACTGCTTGACCGTCAGTA 29240 36 100.0 30 .................................... GTATACCCAGCTCGCACTCGTCCATCCCGG 29306 36 100.0 30 .................................... ACAGTTGCGGGGTCGACGACAACATATGTA 29372 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 29 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGCTTCGTCACTGCAAGCCGAAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTACAACTGCACGTGTATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTCGATCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTAAACGAAGGGTACGATATGTTGCAGTTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAAGCAACGGACAAACACTTGGCAAGATTAAAACGCAACTTACCTCCTCGAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTTGGGGAACCGACAGCACAAGAAAAGAAAATCACATCCACCCAACTTACACTTTTTTAAAAAAAACGGAAATGGTCCCCTTTTTTGCATAAGCATATTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATAGCAGGCTTTTTTGGATACGT # Right flank : CAAACGCATAAAACCATTGTCGTCGATCCCCCGGGATTTTTGCACGATTGGGGGTCGACGACAATGTGAGGCTCGACGGCGAAGAGTCTGCTCTGCTTACCCCTTCACCCGTTCGATCTTCTCAACCGGCAGCCCGGTCAGTTCGTGGATCGTGTCGACATCATACCCTTTCGCCAGCATTCTCCTCACCACGTCGAGCTTCCCTTCCTCAATCCCTTTTTGGCGCCCTTGTTTAATGCCTTGTTTGATCCCTTGTTCGATTCCCTTCTCGATTCCCTTTTCCATTCCCCGCTGTTCGTACGAGACGATGAGCTCCATCACTTGCTTCGCCTCCTTCGTCTCCATTTGGCTCACCTCGTTTCGCAGTTTCGCTTCCTCCTCTTCGGACAACCGCAAATACGTTTCAAAAAAACCGAACAACAGCCGCTGTTTCGCCTCATCGAGCTCAAGGCGGACGAGCATGCGCAAAAATTCTTTTTTCACTTCGACCTTTTCTTCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 29043-28547 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSF01000037.1 Geobacillus sp. MAS1 T260_scaffold22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 29042 30 100.0 35 .............................. CCTGCAAGTCCGATTCCATCGGAAGATGAATGAAT 28977 30 100.0 36 .............................. ATGCATCCAGTTCCTCATAACCCTCACATGCAATCA 28911 30 100.0 35 .............................. GCTCTCGCTCAAACAACGGGTCTTTGCGCCAGTTG 28846 30 100.0 36 .............................. TCTCAAAGCTCACTGTTTTTGGAGATTTGCCACGAA 28780 30 100.0 38 .............................. ATTTCTGGTTGGTATTTCTCTGTCGCCTTGCGTTCAAA 28712 30 96.7 39 .....................A........ TCCAAGTCACCGACAGACCGTACAAGCCGATCCAATTTG 28643 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 28576 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCAACCCGTCCCTTTCCGACGATATCGTCCGCGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAGCGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGAGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //