Array 1 25412-28253 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJH01000011.1 Halorubrum kocurii JCM 14978 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 25412 30 100.0 36 .............................. TTTCTCCCACTCAAGCGGGAAGTTGGTCGCTCGGTG 25478 30 100.0 34 .............................. GACACGGTGATGGTCCGGATGAGCGGGTTGACTG 25542 30 100.0 36 .............................. CGGACACGTGATGCCGCGGCGGCTGCTTCGAGCTGG 25608 30 100.0 36 .............................. ACTCCTGCTTATAAAGTCCCCAACACGCACCCCCTG 25674 30 100.0 37 .............................. ATGCGGATTCCCTCACGGTCCTGATCACGCCCATGAA 25741 30 96.7 36 ................T............. GCCCGGGTGCCTCACCGGCGTCGGCGGCCTCGTCCT 25807 30 100.0 34 .............................. TCCCGGAACCCGCCCCCTCCGAGAATTGGACCGC 25871 30 100.0 35 .............................. TGAACAAATCGAGCGGCAGAGATAAGACCGGGATT 25936 30 100.0 35 .............................. CAGTCTCGAATCTGTGTGCTGAGTTTGTTGTGCGC 26001 30 100.0 35 .............................. ATGCCGTAGAACTCGCGCAGTGCCTGCTGCACCAC 26066 30 100.0 36 .............................. ACCGTGACAACCTCCCCATCCGCTTGTGGTAAGAGA 26132 30 100.0 39 .............................. CTCTCTGGCGGAACTGTATCGGAAGGTGACGAGGTTCAA 26201 30 100.0 33 .............................. GAGCCACGAAGTCGTCGGGCGCGATCTCGCGCA 26264 30 100.0 34 .............................. TGCAAGCCGGTAAGGCCCGCCAAAGTAACAATGC 26328 30 100.0 37 .............................. CACCGACTGAGTGGCTTCCGCGATCGTCACGCGAGTC 26395 30 100.0 33 .............................. AACGTCGTGACCGTCAGCAACGGCTCCGAACTC 26458 30 100.0 35 .............................. TCCATGATCGGCCTGTTCGCCGTTGCGGGCTTGTT 26523 30 100.0 36 .............................. GACCTCGACCTAGCGGGCCTTGAGGGCGCCGTAATC 26589 30 100.0 36 .............................. CAGTCGTGGGATCGGATAGGTGGCGAGATCAAGGAG 26655 30 100.0 36 .............................. GCTCTCATCGGGCTGCTTGTCGCTCTCGATGACGTG 26721 30 100.0 35 .............................. CGCGAGTCTTCGACGGCATACTGAATCTCGGACCA 26786 30 100.0 34 .............................. GCCCAGTGATCCCCGCGGTTCGACACCGCGTGGA 26850 30 100.0 36 .............................. GTCCTGCACGGCCCCCGCGACGACCCACGCCCACAC 26916 30 100.0 37 .............................. GACGGCTACCGCTTCGAGTTCACGCCGGGCTTCTCGG 26983 30 100.0 37 .............................. AGACACAAGCCTTGATACTGAGGTTGTTGATATTGAC 27050 30 100.0 35 .............................. GACTCGTGGAGCCGCGGCACGTCGAAGTACGACGA 27115 30 100.0 37 .............................. TCTACGTGGAACGACGATCGACAGTTCCGCTTCAGTC 27182 30 100.0 35 .............................. GGCACCGATGAGTCGCGGCGCCCCATTCGTCGACG 27247 30 100.0 37 .............................. ATGATCCGGTTGAAACGATATTGGAACTCCTTGAAGC 27314 30 100.0 34 .............................. ATTAGTTATCACCGTCTCCCGTCAGGGAGTCCAC 27378 30 100.0 35 .............................. ACTTGGTTGGGACTCCGAGCTTACCATCCCCGCCA 27443 30 100.0 35 .............................. ACGTTCAAGACCCAACACTCACGCGGTGGTTGTCC 27508 30 100.0 32 .............................. GTTGTCGAACCGACCGGTGTCGTCCTGCAACT 27570 30 100.0 35 .............................. ATCTACGCGGCGCTGTTCGCGCTCGCCGTGATCGG 27635 30 100.0 36 .............................. TTAGCAGAGCGTGGGGAGGGAATCAAATTGCTCATT 27701 30 100.0 36 .............................. CAAACCCCGGCGGATGAAGAGGCACCAGAGGATGGT 27767 30 100.0 36 .............................. ATAGCTAGGTCAAACTGAGTCTCTTCACGCCAGCCC 27833 30 100.0 35 .............................. GCATGGCAGTCCTACGGAACCAAGACACCGGGGAG 27898 30 100.0 36 .............................. ACCGAGCCGAGTCTCACCGAGCCGATCTGCCTCATC 27964 30 100.0 34 .............................. TCTCCTCGCCGCTGAACTCTCCTGTATCACTCAC 28028 30 100.0 36 .............................. GATGCTTACGCTGACTGGGAAAAGGTTGCTATCGCA 28094 30 100.0 35 .............................. GATCCTCGTTGCGTACGAAGCGGGGAACTACTCGG 28159 30 100.0 35 .............................. AGTCGACGTTGGCAACAACGGGTGAGCAGTCAGTA 28224 30 93.3 0 ............................CG | ========== ====== ====== ====== ============================== ======================================= ================== 44 30 99.8 35 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : ACACTCGAACGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATATCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAGATTGAAGATCTCCTTCAGGAGAGAGAATCAGTCATGGTCTACGAACTTTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGAGACGACCCGACCGAAGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCTGGGGGTTTGGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : GATGGCCAATCCTCCGGGTCGGCATCGAGTAACGCCCGGTTTCAGAGGAACCCTACATGTCGAGATAGGGGCCGCAAGCGCGAAATCTGGCACTACTGCCGATCGTCCAGCACGAGTTCAGTAGTATACGCCGACGACCGACACGGTTATCGCTCCAAAGTCGGCGGCTATCAGGCCCACTCATCGAGTTGTTGAGAACCTCCTATTTCATCTGGTGAAACAGCTGTTGGCCTAGTGATATTGTGACGGGTTGGCGTGCAAGATGTAGGGCGCAAATGTGGTACGAATCGAGGCCGATCTACGGGAAAGAATGATCGGTCAGTACAGAGAATGAAGACGACGAACAATACATATTCGTACAATACGGCTGATTTAGGTCGAACGAAGGAGAAGTCGATCCGATATTCTGTCACTCCTAGGCCTCGTACGGCTCAACCAACGTCAGGAGTTCTTGTTCCAGTTCACCGCCAACAAACCGGACGCGCCCCGTTTCAGCCTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //