Array 1 523847-524523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062126.1 Listeria monocytogenes strain FSL F6-0367 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523847 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523912 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523977 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524041 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524107 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524170 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524234 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524299 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524363 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524429 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524452] 524495 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2601297-2599212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062126.1 Listeria monocytogenes strain FSL F6-0367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2601296 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2601230 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2601164 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2601098 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2601032 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2600965 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2600899 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2600833 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2600767 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2600701 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2600635 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2600569 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2600503 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2600437 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2600371 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2600305 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2600239 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2600173 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2600107 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2600041 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2599975 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2599909 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2599842 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2599776 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2599710 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2599644 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2599578 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2599511 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2599445 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2599379 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2599313 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2599247 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //