Array 1 40360-39415 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFID01000012.1 Escherichia coli strain ESC369 EC2506_c12, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     40359	    29	  96.6	    32	............................T	AATGCAGTACGCGCCGGATCCGGTGTTACGTC 	
     40298	    29	 100.0	    32	.............................	CATCCGTTCAAATTCCATCAGATAGCAAACCA 	
     40237	    29	 100.0	    32	.............................	TATTGTTGACTGCTACGAATACGCAGACGAGC 	
     40176	    29	 100.0	    32	.............................	AATTCGGAATCACATTAAAAGGGAACCCGATA 	
     40115	    29	 100.0	    33	.............................	GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC	
     40053	    29	 100.0	    32	.............................	CAAATATATTTTGCGTTAATTATTCGAGGTAA 	
     39992	    29	 100.0	    32	.............................	GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 	
     39931	    29	 100.0	    32	.............................	TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 	
     39870	    29	 100.0	    32	.............................	GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 	
     39809	    29	 100.0	    32	.............................	ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 	
     39748	    29	 100.0	    32	.............................	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 	
     39687	    29	 100.0	    32	.............................	CGATGATGTAATAATTAGAGCAGAATCCAGTT 	
     39626	    29	 100.0	    32	.............................	CAAAATTTAAAATCATTTAAGCTTGTAAAACC 	
     39565	    29	 100.0	    32	.............................	GGTACACGGATATTCTGTCTAAAAGTTAACTA 	
     39504	    29	 100.0	    32	.............................	ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 	
     39443	    29	 100.0	     0	.............................	|                                	
==========	======	======	======	=============================	=================================	==================
        16	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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